Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_H13
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al...    81   1e-16
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    27   2.4  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   3.1  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    26   4.1  

>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
           subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 81.4 bits (192), Expect = 1e-16
 Identities = 49/142 (34%), Positives = 71/142 (50%), Gaps = 5/142 (3%)
 Frame = +2

Query: 242 KKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDTYIVFGEAKIEDLSQ 421
           +KA+K++ KLGLK V+G+ RV +R+ KNIL +IN P V+K+  ++ YIV G+  +ED++ 
Sbjct: 25  EKAQKLIQKLGLKRVEGITRVAMRRPKNILLIINEPIVYKS-SNNAYIVLGKVTVEDMAA 83

Query: 422 QA-----TMAAAERFKXXXXXXXXXXXXXXXXXXXPIAXXXXXXXXXXXXXXXXXXXIVM 586
           QA     +   A   K                                         +VM
Sbjct: 84  QARAFNESQKQATETKEEAAITEESGDAQPADTAKIEESFEQEKAVDETGVDAKDIELVM 143

Query: 587 SQANVSRARAVRALMNNQSDIV 652
           +QANVSRA+AV AL  N SD+V
Sbjct: 144 AQANVSRAKAVTALKENNSDVV 165


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -2

Query: 403 LRLSKYYVSVRVWVLEDIRIVDHKEYVL*FPYCNSVYTLYKLEAKFAHD 257
           LR+S YY S  ++     ++ D   YVL FP+ N+    Y+ E K  +D
Sbjct: 255 LRMSLYYDSNELFK----KMTDDLNYVLKFPFDNTRGNEYEKEQKIRND 299


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 60  LTELDKHCINDGET*ENCFLNVIQMTPSRNLK 155
           LTEL    +ND ET    F N  + T  R+LK
Sbjct: 188 LTELPNSVLNDEETLHELFPNASEFTCVRDLK 219


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 616 SPSP*NVCLRHYYLHVFLVHS 554
           S  P  +CL  Y +H+FL+HS
Sbjct: 123 SDPPVKICLLAYSVHLFLLHS 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,333,519
Number of Sequences: 5004
Number of extensions: 43640
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)