Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_H13
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098          120   8e-28
01_07_0123 + 41206782-41206844,41207701-41207782,41208587-412087...   116   2e-26
10_08_0926 - 21609148-21609618,21609898-21610106,21611638-21611914     33   0.15 
08_02_0952 - 22981116-22981268,22981930-22981974,22982052-229821...    30   1.9  
10_08_0171 + 15404117-15405598                                         28   5.6  
06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053           28   7.5  
03_02_0624 + 9935479-9935619,9935780-9935887                           27   9.9  

>03_01_0148 + 1174097-1174289,1174539-1174672,1174760-1175098
          Length = 221

 Score =  120 bits (290), Expect = 8e-28
 Identities = 65/144 (45%), Positives = 88/144 (61%)
 Frame = +2

Query: 221 AKQSRGEKKARKIMSKLGLKLVQGVNRVTIRKSKNILFVINNPDVFKNPHSDTYIVFGEA 400
           +KQSR EKK+RK M KLG+K V GV+R+TI+++KNILFV++ PDVFK+P S+TY++FGEA
Sbjct: 75  SKQSRSEKKSRKAMMKLGMKPVTGVSRITIKRAKNILFVVSKPDVFKSPTSETYVIFGEA 134

Query: 401 KIEDLSQQATMAAAERFKXXXXXXXXXXXXXXXXXXXPIAXXXXXXXXXXXXXXXXXXXI 580
           KIEDLS Q    AA++F+                     A                   +
Sbjct: 135 KIEDLSSQLQAQAAQQFRMQDLSKVMSKPDAAAA-----APADEEEEVDETGIEPRDIDL 189

Query: 581 VMSQANVSRARAVRALMNNQSDIV 652
           VM+QA+VSRA+AV+AL  +  DIV
Sbjct: 190 VMTQASVSRAKAVKALKAHDGDIV 213


>01_07_0123 +
           41206782-41206844,41207701-41207782,41208587-41208717,
           41208758-41209147
          Length = 221

 Score =  116 bits (279), Expect = 2e-26
 Identities = 80/195 (41%), Positives = 100/195 (51%), Gaps = 19/195 (9%)
 Frame = +2

Query: 125 DSDDTIPELEDAGAPGAGGISNPIAGIDIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRV 304
           + DD   + +D    GAGG        D   ++KQSR EKK+RK M KLG+K + GV+RV
Sbjct: 34  EDDDDDEDDKDDDVEGAGG--------DASGRSKQSRSEKKSRKAMQKLGMKTITGVSRV 85

Query: 305 TIRKSKN-------------------ILFVINNPDVFKNPHSDTYIVFGEAKIEDLSQQA 427
           TI+KSKN                   ILFVI+ PDVFK+P+SDTY++FGEAKIEDLS Q 
Sbjct: 86  TIKKSKNAHRIVIYHCILLNFSLHYQILFVISKPDVFKSPNSDTYVIFGEAKIEDLSSQL 145

Query: 428 TMAAAERFKXXXXXXXXXXXXXXXXXXXPIAXXXXXXXXXXXXXXXXXXXIVMSQANVSR 607
              AAE+FK                   P A                   +VM+QA VSR
Sbjct: 146 QTQAAEQFK-------APDLSNVISKAEPSAAAQDDEEVDESGVEPKDIELVMTQATVSR 198

Query: 608 ARAVRALMNNQSDIV 652
           +RAV+AL     DIV
Sbjct: 199 SRAVKALKAANGDIV 213


>10_08_0926 - 21609148-21609618,21609898-21610106,21611638-21611914
          Length = 318

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +2

Query: 119 QRDSDDTIPELEDAGAPGAGGISNPIAGIDIVSKAKQSRGEKKARKIMSKLGLKLVQGVN 298
           Q+D D  + E  +   P      +PI   ++V  +K S GE     + + L L LV G N
Sbjct: 244 QKDEDGPVQETHEIVKPVPVHSKSPINVDELVGMSKLSIGESNQETVSTSLSLNLVGGQN 303

Query: 299 R 301
           R
Sbjct: 304 R 304


>08_02_0952 -
           22981116-22981268,22981930-22981974,22982052-22982153,
           22983262-22983468,22984783-22985042,22985338-22985442,
           22986244-22986247,22986877-22986962,22987022-22987064
          Length = 334

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 378 VSECGFLKTSGLLITKSMFFDFLIVTLFTPCTSLRPSL 265
           V + G L  SG  +TK++FF+FL   +    T+L  SL
Sbjct: 236 VGDFGILVRSGFTVTKALFFNFLSALVALAGTALALSL 273


>10_08_0171 + 15404117-15405598
          Length = 493

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +2

Query: 206 DIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTI 310
           +I + A++ +  KKARK+M + G+K V G + + +
Sbjct: 412 NIYAVARRWQEAKKARKVMEERGVKKVPGFSEIDV 446


>06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053
          Length = 1613

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/72 (23%), Positives = 36/72 (50%)
 Frame = +2

Query: 131  DDTIPELEDAGAPGAGGISNPIAGIDIVSKAKQSRGEKKARKIMSKLGLKLVQGVNRVTI 310
            DD + ++ D+     GG+   I  I  +  +K +R +++ +K+   LG +L    +  T+
Sbjct: 1033 DDELKQVSDSILKKCGGLPLAIVSIGSLLASKPNRSKEEWQKVCDNLGSEL---ESNPTL 1089

Query: 311  RKSKNILFVINN 346
              +K +L +  N
Sbjct: 1090 EGTKQVLTLSYN 1101


>03_02_0624 + 9935479-9935619,9935780-9935887
          Length = 82

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 397 LSKYYVSVRVWVLEDIRIVDHKEYVL 320
           L +   S+R++   DI +VDHK Y+L
Sbjct: 26  LPRRLFSIRIFRYSDIPLVDHKRYLL 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,941,872
Number of Sequences: 37544
Number of extensions: 314766
Number of successful extensions: 920
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)