Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_H12
         (563 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1278 - 35416451-35416458,35416777-35416969,35416970-354170...    31   0.84 
11_01_0206 - 1618457-1619482                                           29   1.9  
07_03_0444 - 18279368-18279890,18279995-18280326                       28   4.5  
11_06_0255 + 21723913-21725304                                         28   5.9  
07_03_0078 - 13147741-13148913                                         27   7.8  

>02_05_1278 -
           35416451-35416458,35416777-35416969,35416970-35417056,
           35417851-35417892,35418542-35418617,35418954-35421589
          Length = 1013

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 18/36 (50%), Positives = 22/36 (61%)
 Frame = +2

Query: 113 ALRFRPARV*RHCNVTVTSPSRLRNLNPQVAVLRSS 220
           A+RFRPA      N  + S  RLR L P +A+LRSS
Sbjct: 65  AIRFRPADP-ASLNALLYSHCRLRLLRPAIALLRSS 99


>11_01_0206 - 1618457-1619482
          Length = 341

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +2

Query: 2   HEGGLCALELSGTSPVLTFVGAERAAASLDALRYIRTALRFRP 130
           H GGL  LE     P +   GA  AAA+        TA RF P
Sbjct: 146 HSGGLIDLEKEQIGPSVLAAGAAPAAAAASTTATRATAARFLP 188


>07_03_0444 - 18279368-18279890,18279995-18280326
          Length = 284

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -2

Query: 178 PRRRRDGYVAVTSYSRGSEAQRRAYV 101
           PRRRR G VAV+  S G  A+R+  V
Sbjct: 17  PRRRRRGNVAVSPRSEGGGARRKEEV 42


>11_06_0255 + 21723913-21725304
          Length = 463

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +2

Query: 5   EGGLCALELSGTSPV 49
           +G +CAL+LSG+SPV
Sbjct: 286 DGSICALDLSGSSPV 300


>07_03_0078 - 13147741-13148913
          Length = 390

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/38 (42%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
 Frame = -2

Query: 562 CAHHTKAISVDFDHIL--VLHSWTLGPYLK-KQL*QHH 458
           C HH  +     D  L  VLHSW L PY   K   Q H
Sbjct: 114 CGHHAFSGHALLDDTLGLVLHSWLLAPYFSWKYTHQRH 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,454,497
Number of Sequences: 37544
Number of extensions: 218199
Number of successful extensions: 469
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)