Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_H12
         (563 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41508-1|AAG00027.3|  944|Caenorhabditis elegans Set (trithorax/...    28   4.0  

>U41508-1|AAG00027.3|  944|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 19
           protein.
          Length = 944

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 24/75 (32%), Positives = 37/75 (49%)
 Frame = +2

Query: 35  GTSPVLTFVGAERAAASLDALRYIRTALRFRPARV*RHCNVTVTSPSRLRNLNPQVAVLR 214
           G+SP  + +  ERA+   + +   RT L+  PARV          P+R+R  +P+V   +
Sbjct: 580 GSSPQSSGLN-ERASRCRERVTR-RTRLQTTPARVPVELESVSPIPARVRQRSPEVQSPK 637

Query: 215 SSARIIHTRYMCQCD 259
           S  R   TR   +CD
Sbjct: 638 SEMR---TRSRARCD 649


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,824,736
Number of Sequences: 27780
Number of extensions: 200082
Number of successful extensions: 427
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)