Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_H09
(483 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc... 147 9e-37
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom... 147 9e-37
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 25 4.5
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c... 25 4.5
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 25 6.0
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb... 25 7.9
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 7.9
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 25 7.9
>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
L20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 147 bits (356), Expect = 9e-37
Identities = 77/141 (54%), Positives = 92/141 (65%), Gaps = 4/141 (2%)
Frame = +2
Query: 8 AKSRFWYFLRQLKKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRD 187
AKSR+WYFL+ + K KK TGEIV+I EI E P+K K FGIW+RY+SRSG HNMY+E+RD
Sbjct: 36 AKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRD 95
Query: 188 LSVGGAVTQCYRDMGARHRARAHSIQIIK-VEVIKAAACRRPQVKQFHTSKIGFPLPKR- 361
+ GAV Y DM ARHRAR SI+I+K VEV K RR VKQ + FPLP R
Sbjct: 96 TTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRR 155
Query: 362 --VHQYKRLNTFAYKRPSTYF 418
V FA RPST++
Sbjct: 156 TGVVGLAGKKVFAPHRPSTFY 176
>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 147 bits (356), Expect = 9e-37
Identities = 77/141 (54%), Positives = 92/141 (65%), Gaps = 4/141 (2%)
Frame = +2
Query: 8 AKSRFWYFLRQLKKFKKTTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRD 187
AKSR+WYFL+ + K KK TGEIV+I EI E P+K K FGIW+RY+SRSG HNMY+E+RD
Sbjct: 36 AKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSRSGTHNMYKEFRD 95
Query: 188 LSVGGAVTQCYRDMGARHRARAHSIQIIK-VEVIKAAACRRPQVKQFHTSKIGFPLPKR- 361
+ GAV Y DM ARHRAR SI+I+K VEV K RR VKQ + FPLP R
Sbjct: 96 TTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLLNPHLKFPLPHRR 155
Query: 362 --VHQYKRLNTFAYKRPSTYF 418
V FA RPST++
Sbjct: 156 TGVVGLAGKKVFAPHRPSTFY 176
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 4.5
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -3
Query: 475 FFFCYEMDFIV--IIPYIKLHKVRARPLVCKG 386
F F Y FI I+P I++ + A+PL C G
Sbjct: 370 FLFAYPAIFIFMWILPQIQIIVILAQPLHCSG 401
>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 25.4 bits (53), Expect = 4.5
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -3
Query: 169 HIVDTRARLVTQPDTKVLNLNRTLFWNFLDGYNFTSSLF 53
H+V+ + LNL F NF+DG TS+ F
Sbjct: 282 HVVEEVSEEYNDKTVVYLNLLCDSFHNFMDGLAITSAFF 320
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 25.0 bits (52), Expect = 6.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 321 NSTPARSVSRYQNAFTNTSVSIPLHTRGRAR 413
NS+P +S+S+Y NA N SI T +
Sbjct: 148 NSSPFKSLSQYWNAAYNKKESISSSTNSNIK 178
>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 24.6 bits (51), Expect = 7.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 54 LNFFNCLKKYQKRDF 10
+N C+KKY RDF
Sbjct: 111 INLIECMKKYNVRDF 125
>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 689
Score = 24.6 bits (51), Expect = 7.9
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Frame = +2
Query: 5 EAKSRFWYFLRQLKKF---KKTTGEIVSIKEIPEKSPVKIKNFGIWL 136
E K + F R +K K + E +SI IPE +NF +++
Sbjct: 341 ETKKETYKFTRSIKTVIPNKLISNESISILSIPESEKTIYQNFDLYV 387
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 24.6 bits (51), Expect = 7.9
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 59 TTGEIVSIKEIPEKSPVKIKNFGIWLRYESRSGVHNMYR 175
T+G +S P K++ I R S SGVH++ R
Sbjct: 458 TSGASISNTSSPHSEASISKDYEILKRRRSNSGVHSLTR 496
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,063,081
Number of Sequences: 5004
Number of extensions: 40766
Number of successful extensions: 140
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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