Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_H08
(474 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 3.4
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 3.4
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 3.4
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 3.4
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 3.4
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 3.4
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 3.4
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 3.4
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 3.4
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 3.4
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 3.4
SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha... 25 5.9
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 25 5.9
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch... 25 7.8
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 25 7.8
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 48 RPNDKHKLIFKCRRGL 95
R D+HKL F+C RG+
Sbjct: 513 RKGDEHKLAFRCPRGV 528
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 48 RPNDKHKLIFKCRRGL 95
R D+HKL F+C RG+
Sbjct: 513 RKGDEHKLAFRCPRGV 528
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 48 RPNDKHKLIFKCRRGL 95
R D+HKL F+C RG+
Sbjct: 513 RKGDEHKLAFRCPRGV 528
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 48 RPNDKHKLIFKCRRGL 95
R D+HKL F+C RG+
Sbjct: 513 RKGDEHKLAFRCPRGV 528
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 48 RPNDKHKLIFKCRRGL 95
R D+HKL F+C RG+
Sbjct: 513 RKGDEHKLAFRCPRGV 528
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 48 RPNDKHKLIFKCRRGL 95
R D+HKL F+C RG+
Sbjct: 513 RKGDEHKLAFRCPRGV 528
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 48 RPNDKHKLIFKCRRGL 95
R D+HKL F+C RG+
Sbjct: 513 RKGDEHKLAFRCPRGV 528
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 48 RPNDKHKLIFKCRRGL 95
R D+HKL F+C RG+
Sbjct: 513 RKGDEHKLAFRCPRGV 528
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 48 RPNDKHKLIFKCRRGL 95
R D+HKL F+C RG+
Sbjct: 513 RKGDEHKLAFRCPRGV 528
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 48 RPNDKHKLIFKCRRGL 95
R D+HKL F+C RG+
Sbjct: 513 RKGDEHKLAFRCPRGV 528
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 3.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 48 RPNDKHKLIFKCRRGL 95
R D+HKL F+C RG+
Sbjct: 513 RKGDEHKLAFRCPRGV 528
>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 321
Score = 25.0 bits (52), Expect = 5.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 287 AIHKLRETKWFKHDEQNILCAVLETGFILEVRAE 388
A+ K+ T HD++ LC+ +ET I V AE
Sbjct: 268 ALEKVIVTNTIPHDDKRSLCSKIETIDISGVLAE 301
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.0 bits (52), Expect = 5.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 369 FSKSEPRTRCRRTLISLQITICTPSQ 446
F+ S RT C TLI+L T+ T Q
Sbjct: 276 FAPSTSRTSCYYTLITLNQTVLTHKQ 301
>SPCC320.10 |srp72||signal recognition particle subunit
Srp72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 561
Score = 24.6 bits (51), Expect = 7.8
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -1
Query: 237 WLPKRDRSPLTVGCGARVFSGGL 169
W+PKRDR+ + + + GG+
Sbjct: 538 WIPKRDRTNVKIKSKGKSMQGGV 560
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 24.6 bits (51), Expect = 7.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 240 LRLCSHRRNHGLVHRSRSTSSVRPSGLN 323
+ + S++R H L SR+ + RPS +N
Sbjct: 72 MSISSYQRAHSLASTSRNDFNYRPSEIN 99
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,022,207
Number of Sequences: 5004
Number of extensions: 39328
Number of successful extensions: 107
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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