Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_H08
         (474 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0041 - 20440266-20441381                                         28   4.4  
09_04_0164 + 15265878-15268701,15268782-15269200                       28   4.4  
02_05_0336 + 28033315-28033365,28033580-28033585,28033798-280338...    27   5.8  
02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142     27   5.8  
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804...    27   5.8  
07_01_0771 + 5917550-5917829,5918390-5918526,5918617-5918742,591...    27   7.7  

>09_06_0041 - 20440266-20441381
          Length = 371

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 146 TCRSFQQIKPPEKTLAPQPTVKGLLSRFGSHAQALFAPKKPR 271
           +CR+++ + P  + L    +   L+S + S A+ALF P+  R
Sbjct: 62  SCRAYRALLPASRRLLASQSPLLLVSLYPSFAEALFHPRLRR 103


>09_04_0164 + 15265878-15268701,15268782-15269200
          Length = 1080

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
 Frame = +2

Query: 149  CRSFQQIKPPEKTLAPQPTVKGLLSRFGSHAQALFAPKKP---RFGSSVAIHKLRETKWF 319
            C S   I PPE      PT KG +  FG     +   KKP    F + +++H     KW 
Sbjct: 933  CGSIGYI-PPEYGYGSNPTTKGDVYSFGVLVLEMVTRKKPIDDMFDAGLSLH-----KWV 986

Query: 320  KHDEQNILCAVLETGFILEVR 382
            K+       AV++      VR
Sbjct: 987  KNHYHGRADAVVDPALARMVR 1007


>02_05_0336 +
           28033315-28033365,28033580-28033585,28033798-28033884,
           28034741-28034830,28035736-28037778,28037916-28038062,
           28038148-28038560,28038656-28038755
          Length = 978

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 342 SMFCSSCLNHLVSRSLWIATDEPNR 268
           SMFC+SC N+ VSR+  +A D   R
Sbjct: 580 SMFCNSCSNNKVSRAA-LAPDRSKR 603


>02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142
          Length = 534

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +2

Query: 179 EKTLAPQPTVKGLLSRFGSHAQALFAPKKPRFGSSV-AIHKLRETKWFKHDEQNILCAVL 355
           E+ L P PT  GL   F +    L   ++PR    + A+H+    + + H++ ++     
Sbjct: 218 EQRLTPVPTPPGLTFAFPNSEVVLLRRRRPREAFFLAALHRPTLCRQYTHEQFDLHLYSS 277

Query: 356 ETG 364
           ETG
Sbjct: 278 ETG 280


>01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,
            8048455-8048540,8048698-8048983,8049063-8049205,
            8049308-8049508,8049626-8049754,8050463-8050738,
            8050823-8051098,8051364-8052364,8052452-8052634,
            8052865-8052937,8053205-8053313,8053622-8053785
          Length = 1093

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = -1

Query: 336  FCSSCLNHLVSRSLWIATDEPNRGFFGANRA*AW---LPKRDRSPLT 205
            FC  C + +VS S W+ T   N  FF   R  A     P +DR P T
Sbjct: 949  FCKHCHHPIVSGSSWVCTSCKN--FFLCERCYAEELNTPLKDRHPAT 993


>07_01_0771 +
           5917550-5917829,5918390-5918526,5918617-5918742,
           5919168-5919221,5919344-5919457,5919895-5919950,
           5920017-5920058,5920580-5920655,5920765-5920836,
           5920908-5921033,5921117-5921221,5921333-5921416,
           5921636-5921683
          Length = 439

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +2

Query: 188 LAPQPTVKGLLSRFGSHAQ---ALFAPKKPRFGSSVAIHKLRETKWFKHD 328
           LA  P +   L R+G +      LFAP  PRFG SV  + + E     HD
Sbjct: 66  LADDPKLS--LHRYGQYLYDGLVLFAPSTPRFGGSVDQNSILEFIDAGHD 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,948,058
Number of Sequences: 37544
Number of extensions: 289416
Number of successful extensions: 838
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)