Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_H08
         (474 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY358491-1|AAQ88855.1|  139|Homo sapiens GLLV3061 protein.             31   2.0  
AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isofo...    30   4.7  
AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (auto...    30   4.7  
AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (auto...    30   4.7  
AL445650-3|CAH70620.1| 1546|Homo sapiens Usher syndrome 2A (auto...    30   4.7  
AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (auto...    30   4.7  
AL358858-1|CAH71587.1| 1546|Homo sapiens Usher syndrome 2A (auto...    30   4.7  
AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (auto...    30   4.7  
AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (auto...    30   4.7  
AF091889-1|AAF75819.1| 1546|Homo sapiens Usher syndrome type IIa...    30   4.7  
AF055580-1|AAC23748.2| 1546|Homo sapiens Usher syndrome type IIa...    30   4.7  

>AY358491-1|AAQ88855.1|  139|Homo sapiens GLLV3061 protein.
          Length = 139

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 81  CRRGLILSVRVRSGVQWKRGS*LAGV 158
           CRRGL+L V  + G  W+RG   AG+
Sbjct: 83  CRRGLLLGVEGQMGFGWERGGMWAGL 108


>AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isoform
           B protein.
          Length = 5202

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = +2

Query: 167 IKPPEKTLAPQPTVKGLLSRFGSHAQALFAPKKPRFGSSVAIHKLRETKWFKHDEQNILC 346
           I P +  L P          FG+H     +P  P+  +S  +       W K ++Q ++C
Sbjct: 109 ITPDKNDLHPNAHSNSASFIFGNHKSCFSSPPSPKLMASFTL-----AVWLKPEQQGVMC 163

Query: 347 AVLET 361
            + +T
Sbjct: 164 VIEKT 168


>AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A
           (autosomal recessive, mild) protein.
          Length = 5202

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = +2

Query: 167 IKPPEKTLAPQPTVKGLLSRFGSHAQALFAPKKPRFGSSVAIHKLRETKWFKHDEQNILC 346
           I P +  L P          FG+H     +P  P+  +S  +       W K ++Q ++C
Sbjct: 109 ITPDKNDLHPNAHSNSASFIFGNHKSCFSSPPSPKLMASFTL-----AVWLKPEQQGVMC 163

Query: 347 AVLET 361
            + +T
Sbjct: 164 VIEKT 168


>AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A
           (autosomal recessive, mild) protein.
          Length = 5202

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = +2

Query: 167 IKPPEKTLAPQPTVKGLLSRFGSHAQALFAPKKPRFGSSVAIHKLRETKWFKHDEQNILC 346
           I P +  L P          FG+H     +P  P+  +S  +       W K ++Q ++C
Sbjct: 109 ITPDKNDLHPNAHSNSASFIFGNHKSCFSSPPSPKLMASFTL-----AVWLKPEQQGVMC 163

Query: 347 AVLET 361
            + +T
Sbjct: 164 VIEKT 168


>AL445650-3|CAH70620.1| 1546|Homo sapiens Usher syndrome 2A
           (autosomal recessive, mild) protein.
          Length = 1546

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = +2

Query: 167 IKPPEKTLAPQPTVKGLLSRFGSHAQALFAPKKPRFGSSVAIHKLRETKWFKHDEQNILC 346
           I P +  L P          FG+H     +P  P+  +S  +       W K ++Q ++C
Sbjct: 109 ITPDKNDLHPNAHSNSASFIFGNHKSCFSSPPSPKLMASFTL-----AVWLKPEQQGVMC 163

Query: 347 AVLET 361
            + +T
Sbjct: 164 VIEKT 168


>AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A
           (autosomal recessive, mild) protein.
          Length = 5202

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = +2

Query: 167 IKPPEKTLAPQPTVKGLLSRFGSHAQALFAPKKPRFGSSVAIHKLRETKWFKHDEQNILC 346
           I P +  L P          FG+H     +P  P+  +S  +       W K ++Q ++C
Sbjct: 109 ITPDKNDLHPNAHSNSASFIFGNHKSCFSSPPSPKLMASFTL-----AVWLKPEQQGVMC 163

Query: 347 AVLET 361
            + +T
Sbjct: 164 VIEKT 168


>AL358858-1|CAH71587.1| 1546|Homo sapiens Usher syndrome 2A
           (autosomal recessive, mild) protein.
          Length = 1546

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = +2

Query: 167 IKPPEKTLAPQPTVKGLLSRFGSHAQALFAPKKPRFGSSVAIHKLRETKWFKHDEQNILC 346
           I P +  L P          FG+H     +P  P+  +S  +       W K ++Q ++C
Sbjct: 109 ITPDKNDLHPNAHSNSASFIFGNHKSCFSSPPSPKLMASFTL-----AVWLKPEQQGVMC 163

Query: 347 AVLET 361
            + +T
Sbjct: 164 VIEKT 168


>AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A
           (autosomal recessive, mild) protein.
          Length = 5202

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = +2

Query: 167 IKPPEKTLAPQPTVKGLLSRFGSHAQALFAPKKPRFGSSVAIHKLRETKWFKHDEQNILC 346
           I P +  L P          FG+H     +P  P+  +S  +       W K ++Q ++C
Sbjct: 109 ITPDKNDLHPNAHSNSASFIFGNHKSCFSSPPSPKLMASFTL-----AVWLKPEQQGVMC 163

Query: 347 AVLET 361
            + +T
Sbjct: 164 VIEKT 168


>AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A
           (autosomal recessive, mild) protein.
          Length = 5202

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = +2

Query: 167 IKPPEKTLAPQPTVKGLLSRFGSHAQALFAPKKPRFGSSVAIHKLRETKWFKHDEQNILC 346
           I P +  L P          FG+H     +P  P+  +S  +       W K ++Q ++C
Sbjct: 109 ITPDKNDLHPNAHSNSASFIFGNHKSCFSSPPSPKLMASFTL-----AVWLKPEQQGVMC 163

Query: 347 AVLET 361
            + +T
Sbjct: 164 VIEKT 168


>AF091889-1|AAF75819.1| 1546|Homo sapiens Usher syndrome type IIa
           protein protein.
          Length = 1546

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = +2

Query: 167 IKPPEKTLAPQPTVKGLLSRFGSHAQALFAPKKPRFGSSVAIHKLRETKWFKHDEQNILC 346
           I P +  L P          FG+H     +P  P+  +S  +       W K ++Q ++C
Sbjct: 109 ITPDKNDLHPNAHSNSASFIFGNHKSCFSSPPSPKLMASFTL-----AVWLKPEQQGVMC 163

Query: 347 AVLET 361
            + +T
Sbjct: 164 VIEKT 168


>AF055580-1|AAC23748.2| 1546|Homo sapiens Usher syndrome type IIa
           protein protein.
          Length = 1546

 Score = 29.9 bits (64), Expect = 4.7
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = +2

Query: 167 IKPPEKTLAPQPTVKGLLSRFGSHAQALFAPKKPRFGSSVAIHKLRETKWFKHDEQNILC 346
           I P +  L P          FG+H     +P  P+  +S  +       W K ++Q ++C
Sbjct: 109 ITPDKNDLHPNAHSNSASFIFGNHKSCFSSPPSPKLMASFTL-----AVWLKPEQQGVMC 163

Query: 347 AVLET 361
            + +T
Sbjct: 164 VIEKT 168


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,427,383
Number of Sequences: 237096
Number of extensions: 1601198
Number of successful extensions: 7637
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7634
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4156838854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)