Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_H08
         (474 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-38|CAL49444.1|  982|Caenorhabditis elegans Hypothetical...    29   2.3  
AL117204-31|CAB55122.2|  727|Caenorhabditis elegans Hypothetical...    29   2.3  
AL110500-18|CAB54478.1|  118|Caenorhabditis elegans Hypothetical...    29   2.3  
Z48245-2|CAA88291.1|  309|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z37139-10|CAA85495.1|  309|Caenorhabditis elegans Hypothetical p...    27   9.1  
U95074-2|AAB94648.1|  309|Caenorhabditis elegans cyclophilin iso...    27   9.1  
U36581-1|AAC47131.1|  309|Caenorhabditis elegans cyclophilin iso...    27   9.1  

>AL117204-38|CAL49444.1|  982|Caenorhabditis elegans Hypothetical
           protein Y116A8C.16c protein.
          Length = 982

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = +3

Query: 306 RPSGLNMMNRTYFVPSSKPDSFSKSEPRTRCRRTLISLQITICTPSQCGRRVKKKQ 473
           RP    +  R   V S +PD     EP T  RR ++  Q TI        RV+ +Q
Sbjct: 321 RPKPTVLGERQALVASKRPDRVLMQEPSTSSRRGVLKRQHTIEPIDDVKYRVRHEQ 376


>AL117204-31|CAB55122.2|  727|Caenorhabditis elegans Hypothetical
           protein Y116A8C.16a protein.
          Length = 727

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = +3

Query: 306 RPSGLNMMNRTYFVPSSKPDSFSKSEPRTRCRRTLISLQITICTPSQCGRRVKKKQ 473
           RP    +  R   V S +PD     EP T  RR ++  Q TI        RV+ +Q
Sbjct: 66  RPKPTVLGERQALVASKRPDRVLMQEPSTSSRRGVLKRQHTIEPIDDVKYRVRHEQ 121


>AL110500-18|CAB54478.1|  118|Caenorhabditis elegans Hypothetical
           protein Y87G2A.18 protein.
          Length = 118

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 396 NGSSALTSRMNPVSRTAQSMFCSSCLNHLVS 304
           N S  +TSR +P +     M C  C NH+VS
Sbjct: 27  NDSRYITSRTSPYNVMPIEMDCPHCQNHIVS 57


>Z48245-2|CAA88291.1|  309|Caenorhabditis elegans Hypothetical
           protein T27D1.1 protein.
          Length = 309

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
 Frame = -3

Query: 469 FFFTLL--PHCDGVHMVIWREIRVRRQRVLGSDFENESGFEDGTKYVLFIMFKPLGLTEL 296
           FF T    PHC+G H V++ E+ V+ Q V+  D+ +    +D +K +  ++    G  EL
Sbjct: 121 FFITTAAAPHCNGKH-VVFGEV-VKGQNVV--DYIDNLAVDDKSKPLAKVLISNCG--EL 174

Query: 295 VDRDR*TKPWFLRCEQSLSMAAETR 221
           V +    KP  L+ ++ L+ A E +
Sbjct: 175 VKK---KKP--LKTDEELAAALEEK 194


>Z37139-10|CAA85495.1|  309|Caenorhabditis elegans Hypothetical
           protein T27D1.1 protein.
          Length = 309

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
 Frame = -3

Query: 469 FFFTLL--PHCDGVHMVIWREIRVRRQRVLGSDFENESGFEDGTKYVLFIMFKPLGLTEL 296
           FF T    PHC+G H V++ E+ V+ Q V+  D+ +    +D +K +  ++    G  EL
Sbjct: 121 FFITTAAAPHCNGKH-VVFGEV-VKGQNVV--DYIDNLAVDDKSKPLAKVLISNCG--EL 174

Query: 295 VDRDR*TKPWFLRCEQSLSMAAETR 221
           V +    KP  L+ ++ L+ A E +
Sbjct: 175 VKK---KKP--LKTDEELAAALEEK 194


>U95074-2|AAB94648.1|  309|Caenorhabditis elegans cyclophilin
           isoform 9 protein.
          Length = 309

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
 Frame = -3

Query: 469 FFFTLL--PHCDGVHMVIWREIRVRRQRVLGSDFENESGFEDGTKYVLFIMFKPLGLTEL 296
           FF T    PHC+G H V++ E+ V+ Q V+  D+ +    +D +K +  ++    G  EL
Sbjct: 121 FFITTAAAPHCNGKH-VVFGEV-VKGQNVV--DYIDNLAVDDKSKPLAKVLISNCG--EL 174

Query: 295 VDRDR*TKPWFLRCEQSLSMAAETR 221
           V +    KP  L+ ++ L+ A E +
Sbjct: 175 VKK---KKP--LKTDEELAAALEEK 194


>U36581-1|AAC47131.1|  309|Caenorhabditis elegans cyclophilin
           isoform 9 protein.
          Length = 309

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
 Frame = -3

Query: 469 FFFTLL--PHCDGVHMVIWREIRVRRQRVLGSDFENESGFEDGTKYVLFIMFKPLGLTEL 296
           FF T    PHC+G H V++ E+ V+ Q V+  D+ +    +D +K +  ++    G  EL
Sbjct: 121 FFITTAAAPHCNGKH-VVFGEV-VKGQNVV--DYIDNLAVDDKSKPLAKVLISNCG--EL 174

Query: 295 VDRDR*TKPWFLRCEQSLSMAAETR 221
           V +    KP  L+ ++ L+ A E +
Sbjct: 175 VKK---KKP--LKTDEELAAALEEK 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,418,188
Number of Sequences: 27780
Number of extensions: 230959
Number of successful extensions: 604
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)