Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_H07
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    27   2.1  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    26   3.6  
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces...    25   4.8  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    25   4.8  
SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual    25   6.3  

>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -3

Query: 476 NTLYSVNINIYIGGHKIYFPIPRKSVLLWLNSPSYFSFFKNT 351
           NT ++    + +G    +FP P+ S L  +N+ +YF    N+
Sbjct: 322 NTPFNSTATVDVGAAGSHFPYPQPSNLDAINAKTYFQSSSNS 363


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 494 LSQDLNNTLYSVNINIYIGGHKIYFPIP 411
           +S+ L + LYS + N    GH+ + PIP
Sbjct: 177 MSEVLRSLLYSDDTNSRFAGHRRFNPIP 204


>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 93  WHGARPSVPHYILHWGTPVS 34
           W G+ PS P +++  G P+S
Sbjct: 44  WMGSHPSGPSFVMQTGKPLS 63


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
            Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 69   ARRDELRASQSSVPVITPYSDLVSSIHDERKL*HFSKNNLVLFI 200
            ARR+ELR SQ S+  +T   D       ER     +K+   +F+
Sbjct: 990  ARREELRRSQESISELTTVLDQRKDEAIERTFKQVAKSFSEIFV 1033


>SPCC11E10.02c |gpi8||pig-K|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 298 LILKNTFWFRYEHDYNLFVFLKNEKYEGL 384
           LI  + FWF Y H  N+    ++ K  G+
Sbjct: 30  LISTSRFWFNYRHTANVLGIYRSVKRLGI 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,986,810
Number of Sequences: 5004
Number of extensions: 39550
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)