Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_H07
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0450 - 3487464-3487844,3487883-3488268,3488883-3489033,348...    33   0.096
02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732     30   1.2  
12_02_0887 + 24018847-24019281                                         28   4.8  
04_03_0394 - 15340726-15341990,15342091-15342186,15342278-15342302     27   6.3  
04_03_0333 + 14569377-14569401,14569493-14569588,14569689-14570953     27   6.3  

>11_01_0450 - 3487464-3487844,3487883-3488268,3488883-3489033,
            3489132-3491102,3492090-3492149,3492240-3492436,
            3492678-3492963
          Length = 1143

 Score = 33.5 bits (73), Expect = 0.096
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +3

Query: 18   LPIALVRPESPNAICNGARRDELRASQSSVPVITP--YSDLVSSIHDERKL 164
            LP+A   P +P A+CN   R+    + + + + +P  +SD+VS   ++R L
Sbjct: 936  LPVAPTPPATPTALCNNGEREISAGTFNPIALFSPRSFSDIVSPKTEDRVL 986


>02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732
          Length = 1050

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 421 SQSRGSLFYFGLTALRTFRFSKIQTNY 341
           +Q RGSLF  GLT+L   RF  +  N+
Sbjct: 135 NQIRGSLFQLGLTSLTKLRFLVLSNNF 161


>12_02_0887 + 24018847-24019281
          Length = 144

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 6   RALPLPIALVRPESPNAICNGARRDELRASQSSVPVITPYSDLVSSIHDER 158
           R +P P ++ R   P+A   G R+   R ++ S PV  P    V+   +ER
Sbjct: 56  RIVPRPNSVSRQVRPSAANPGIRQRHARWARDSTPVKPPSPSAVTPRDEER 106


>04_03_0394 - 15340726-15341990,15342091-15342186,15342278-15342302
          Length = 461

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 140 RDKVRVWCYHWHGALTGTELVPPCPI 63
           R ++R  C HW  +  G  L PP P+
Sbjct: 84  RARMRSVCRHWRASANGHVLPPPLPL 109


>04_03_0333 + 14569377-14569401,14569493-14569588,14569689-14570953
          Length = 461

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 140 RDKVRVWCYHWHGALTGTELVPPCPI 63
           R ++R  C HW  +  G  L PP P+
Sbjct: 84  RARMRSVCRHWRASANGHVLPPPLPL 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,061,993
Number of Sequences: 37544
Number of extensions: 222627
Number of successful extensions: 499
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)