Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_H07
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78065-5|CAB01515.1|  954|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AF077544-4|ABD94098.1|  348|Caenorhabditis elegans Hypothetical ...    27   5.7  
AF077544-3|AAK39242.3|  458|Caenorhabditis elegans Hypothetical ...    27   5.7  

>Z78065-5|CAB01515.1|  954|Caenorhabditis elegans Hypothetical
           protein T09E8.2 protein.
          Length = 954

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +3

Query: 9   ALPLPIAL----VRPESPNAICNGARRDELRASQSSVPVITPYSD 131
           ALPLPI      + P  PN++C     D+ +  +  VP   P+S+
Sbjct: 612 ALPLPIDSDDFDLTPRGPNSVCKCVLCDDWKKVEDMVPFRAPHSE 656


>AF077544-4|ABD94098.1|  348|Caenorhabditis elegans Hypothetical
           protein H22K11.4b protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 494 LSQDLNNTLYSVNINIYIGGHKIYFPIPRKSVLLWLNS 381
           L   L NT    N+N YI G +  + IPR    ++ NS
Sbjct: 43  LENSLRNTFRGRNVNPYIAGVRSRYIIPRGKEHIFKNS 80


>AF077544-3|AAK39242.3|  458|Caenorhabditis elegans Hypothetical
           protein H22K11.4a protein.
          Length = 458

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 494 LSQDLNNTLYSVNINIYIGGHKIYFPIPRKSVLLWLNS 381
           L   L NT    N+N YI G +  + IPR    ++ NS
Sbjct: 153 LENSLRNTFRGRNVNPYIAGVRSRYIIPRGKEHIFKNS 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,869,198
Number of Sequences: 27780
Number of extensions: 217595
Number of successful extensions: 540
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)