Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_H06
         (437 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   5.1  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    25   6.7  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    25   6.7  
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...    25   6.7  
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...    25   6.7  
SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C...    24   8.9  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    24   8.9  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    24   8.9  
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce...    24   8.9  

>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 9/44 (20%), Positives = 22/44 (50%)
 Frame = -3

Query: 234  AESQCHSDKGNDKYTNATITSQTSILHCLSFLSICMQQMNM*NK 103
            A  Q +++   D Y +  + + + ++HC S  ++    + + NK
Sbjct: 1319 AVKQMYAESEGDSYVSEVLNTLSEVVHCTSTYALSSACLTVWNK 1362


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 50  IYLFSTCIKFSE*FEEIFLFYMFICCI 130
           I LF+  I  S  F   F FY+  CC+
Sbjct: 23  ILLFALVIILSVIFINFFFFYLCRCCV 49


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 268 RSARLDRLGLWTYCFRSLPD 327
           R A++ RLG+W     S+PD
Sbjct: 300 RKAKISRLGIWKNISVSIPD 319


>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 396 PVVNWIINPTASYKE 352
           P +NWI+NP   ++E
Sbjct: 146 PRINWIVNPVHKHRE 160


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 396 PVVNWIINPTASYKE 352
           P +NWI+NP   ++E
Sbjct: 146 PRINWIVNPVHKHRE 160


>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 114 CSFAAYRLKGNSDNEE*KFGW*LWHWCIYHCP 209
           C +AAY   GN+D +  K    +W++ I + P
Sbjct: 118 CMYAAYHCLGNNDLDSAK----VWYFSILYIP 145


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 165 SILHCLSFLSICMQQMNM*NKN 100
           SI  C+ FLS+  +Q  + NKN
Sbjct: 387 SIEQCIQFLSLIREQKEIFNKN 408


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 184 GIGVFIIALVTVALAFGTPSWLASDPKIR 270
           G+G+F + LV    + G   WL S P ++
Sbjct: 544 GVGLFWVYLVGKLRSLGVTKWLLSLPPLQ 572


>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 469

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 299 GLIALGLFQIL*TSIKDGSL*DAVGF 376
           G I+LGL  I+  +IKDG+  + +G+
Sbjct: 93  GRISLGLSVIVRVTIKDGAYHEDIGY 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,807,655
Number of Sequences: 5004
Number of extensions: 34453
Number of successful extensions: 89
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)