Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_H06
         (437 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0338 + 7614199-7614450,7614518-7614703,7614815-7614927,761...    32   0.18 
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731...    27   8.7  

>03_02_0338 +
           7614199-7614450,7614518-7614703,7614815-7614927,
           7615023-7615206,7615343-7615440,7616113-7616578,
           7617342-7617683
          Length = 546

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +1

Query: 187 IGVFIIALVTVALAFGTPSWLASDPKIRSARLDRLGLWTYCFRSLPDPL 333
           I  F++A V V + FG   W +    +R  ++D  GL+T C++  P PL
Sbjct: 452 INAFVVAWVLV-VGFGFGGWASMTNFVR--QIDTFGLFTKCYQCPPPPL 497


>12_01_0798 +
           7314885-7314953,7315324-7315387,7315489-7315677,
           7316430-7316625,7316727-7316953,7317177-7318134,
           7320104-7321307,7321517-7321876,7321965-7323195,
           7323334-7323599,7323738-7326335
          Length = 2453

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 432 TPGSKNPLILSYPVVNWIINPTASYKEPSLIL 337
           T  + N L LSYP+VN +++  +S + P   +
Sbjct: 147 TRRTSNQLKLSYPIVNIVVHDGSSSERPGFYI 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,993,473
Number of Sequences: 37544
Number of extensions: 199711
Number of successful extensions: 411
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)