Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_H04
(239 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 134 1e-33
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 134 1e-33
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.082
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 0.25
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 0.76
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 1.0
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po... 25 1.3
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 1.8
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c... 25 1.8
SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ... 23 4.1
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 23 5.4
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch... 23 5.4
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 23 5.4
SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit Cdc1|S... 23 7.1
SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 23 7.1
SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe... 23 7.1
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 23 7.1
SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr 2... 23 7.1
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 22 9.4
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 22 9.4
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 22 9.4
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc... 22 9.4
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos... 22 9.4
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 22 9.4
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 134 bits (325), Expect = 1e-33
Identities = 58/71 (81%), Positives = 65/71 (91%)
Frame = +2
Query: 26 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 205
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 206 SSEALEAGRIC 238
+SEALEA RIC
Sbjct: 61 TSEALEAARIC 71
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 134 bits (325), Expect = 1e-33
Identities = 58/71 (81%), Positives = 65/71 (91%)
Frame = +2
Query: 26 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 205
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 206 SSEALEAGRIC 238
+SEALEA RIC
Sbjct: 61 TSEALEAARIC 71
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 29.1 bits (62), Expect = 0.082
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 50 YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 226
Y+ N ++FC V + KI + +KRA +D LC+ +S + E ++ +LE+
Sbjct: 34 YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93
Query: 227 G 229
G
Sbjct: 94 G 94
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 0.25
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 107 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 226
DPK+R+F KRAT + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.8 bits (54), Expect = 0.76
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -1
Query: 221 PAPQNSAARTHQTLSARIVGSHPLSLSFCPSRKYGSLGQA 102
P P +S+ R Q+LSA + S+P S PS GSL +
Sbjct: 473 PKPSSSSRRRSQSLSAMLKTSNPYMPS--PSLLSGSLANS 510
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 1.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 128 DLGKKRATVDDFPLCVHLVSDEYEQL 205
++ KKRA DD + +VS EYE L
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENL 1058
>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 1.3
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -2
Query: 166 WEVIHCRSLFAQVENTDLWVRHTPT 92
+ ++H +LFA EN D ++ PT
Sbjct: 343 YAILHWNTLFANEENWDSYIPQDPT 367
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 24.6 bits (51), Expect = 1.8
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +2
Query: 83 SRFCRGVPDPKIRIFDLGKKRATVDDFP-LCVHLVSDE 193
S FC PDPK K A DD P + H+ S++
Sbjct: 84 SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121
>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 297
Score = 24.6 bits (51), Expect = 1.8
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +3
Query: 132 WAKRERQWMTSH 167
W +RERQW+ H
Sbjct: 91 WLRRERQWLQRH 102
>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 307
Score = 23.4 bits (48), Expect = 4.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 122 IFDLGKKRATVDDFPLCVH 178
IFD AT+DD CVH
Sbjct: 143 IFDFLTLSATIDDTIFCVH 161
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 77 DTVYSYNIDNISLVGAPLCSPQSP 6
+++ + N NIS APL S QSP
Sbjct: 208 ESLETRNPGNISSSSAPLASDQSP 231
>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 382
Score = 23.0 bits (47), Expect = 5.4
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -1
Query: 194 THQTLSARIVGSHPLSLSFCPSRKYGSLGQAHPD-KTEI 81
T + L I+ +H L+ + +R+ GSL PD KT++
Sbjct: 133 TPEKLPLTILLAHKLNAAMSVARRDGSLPWLRPDTKTQV 171
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 23.0 bits (47), Expect = 5.4
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -2
Query: 55 SITSRWSAPHC 23
+I SRW PHC
Sbjct: 496 TIKSRWEIPHC 506
>SPAC27E2.05 |cdc1|mis1|DNA polymerase delta small subunit
Cdc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -2
Query: 130 VENTDLWVRHTPTKP 86
+ENT LW TPT P
Sbjct: 363 MENTLLWNHITPTSP 377
>SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 159
Score = 22.6 bits (46), Expect = 7.1
Identities = 5/20 (25%), Positives = 14/20 (70%)
Frame = +2
Query: 164 PLCVHLVSDEYEQLSSEALE 223
P+C+ + DE+E++ ++ +
Sbjct: 66 PICIDNIPDEFEEIDAKTFD 85
>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 395
Score = 22.6 bits (46), Expect = 7.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 82 ISVLSGCA*PKDPYFRL 132
I L CA +DPYFRL
Sbjct: 229 IPCLIPCAIDQDPYFRL 245
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -1
Query: 59 NIDNISLVGAPLCSPQSP 6
NI N+ APLCS P
Sbjct: 542 NITNVRSASAPLCSSPVP 559
>SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 209
Score = 22.6 bits (46), Expect = 7.1
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +2
Query: 110 PKI--RIFDLGKKRATVDDFPLCVHLVSDEYEQLSS 211
PKI + +GK ++ FPL + +S Q SS
Sbjct: 93 PKIINDVLVIGKSDGLINSFPLSQNYISSSESQTSS 128
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +3
Query: 108 TQRSVFSTWAKRERQWMT 161
T SV+S WA + W T
Sbjct: 194 TNESVYSDWANKIWDWTT 211
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 22.2 bits (45), Expect = 9.4
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = +2
Query: 14 VENTMGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRI 124
++N PA R KN P S F P P I +
Sbjct: 262 MQNPHNSFPASADRLQKNHPVQSSNFNPYTPAPSITV 298
>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +2
Query: 32 RRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGK 139
R+PAR + KP+ S + +P +I ++G+
Sbjct: 86 RKPARHPQSSSQKPFASSTYNVELPTSPTKITNIGQ 121
>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 38 VGAPLCSPQSPR 3
+GA C+PQSPR
Sbjct: 221 LGAITCTPQSPR 232
>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 467
Score = 22.2 bits (45), Expect = 9.4
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 149 TVDDFPLCVHLVSDE 193
T DD+ LC+H +S +
Sbjct: 99 TEDDYILCIHRISKD 113
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 188 DEYEQLSSEALEAGRIC 238
+EYE++ + A E RIC
Sbjct: 932 EEYERIDAMAKEQSRIC 948
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,039,363
Number of Sequences: 5004
Number of extensions: 19011
Number of successful extensions: 63
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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