Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_H04
(239 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 121 7e-29
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 116 2e-27
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 101 8e-23
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 26 3.7
07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371 26 3.7
05_06_0191 - 26265460-26267016,26267858-26268356,26268789-262688... 26 3.7
10_08_0972 + 21958658-21958825,21959006-21959197,21959645-219598... 26 4.9
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 26 4.9
06_03_0175 + 17553447-17553667,17555313-17555467,17555625-175557... 26 4.9
09_05_0015 - 20083143-20083308,20083645-20084017,20084362-200846... 25 6.5
07_03_0572 - 19604643-19604745,19604947-19605629,19605786-196062... 25 6.5
06_01_1064 - 8609162-8610583 25 6.5
06_01_1060 + 8522131-8523606 25 6.5
05_03_0363 - 12983243-12983304,12983526-12983658 25 6.5
03_04_0169 - 17959262-17959304,17959441-17959532,17959682-179597... 25 6.5
02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,850... 25 6.5
01_07_0232 + 42182942-42183490,42183593-42183661,42184320-421844... 25 6.5
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 121 bits (292), Expect = 7e-29
Identities = 54/70 (77%), Positives = 60/70 (85%)
Frame = +2
Query: 26 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 205
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 206 SSEALEAGRI 235
SSEALEA RI
Sbjct: 61 SSEALEAARI 70
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 116 bits (280), Expect = 2e-27
Identities = 51/66 (77%), Positives = 57/66 (86%)
Frame = +2
Query: 38 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEA 217
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 218 LEAGRI 235
LEA RI
Sbjct: 372 LEAARI 377
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 101 bits (242), Expect = 8e-23
Identities = 45/63 (71%), Positives = 52/63 (82%)
Frame = +2
Query: 47 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 226
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 227 GRI 235
RI
Sbjct: 64 ARI 66
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 149 TVDDFPLC-VHLVSDEYEQLSSEALEAGR 232
T D P C +HL SD Y S E ++AG+
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGK 615
>07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371
Length = 437
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 56 YCKNKPYPKSRFCRGVPDPKIRIFDL--GKKRATVDDFPLCVHLVSDEYEQLSSE 214
+CK+ P KS + G+P P FD+ GK R ++ L +V+D + + E
Sbjct: 141 HCKDHPRAKSLY--GIPFPYFDTFDVIYGKDRTGREEEELSDEVVADMENENTDE 193
>05_06_0191 -
26265460-26267016,26267858-26268356,26268789-26268859,
26269079-26269515,26269626-26269681,26269682-26270479,
26270918-26270973
Length = 1157
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 56 YCKNKPYPKSRFCRGVPDPKIRIFDLGKKRA 148
+C +PYPK VPD ++ GK +A
Sbjct: 395 FCMYEPYPKGSLEDDVPDTTVQDMLCGKAKA 425
>10_08_0972 +
21958658-21958825,21959006-21959197,21959645-21959845,
21959920-21960009,21960424-21960591,21961100-21961354,
21961506-21961789,21961878-21962040,21962156-21962502,
21962726-21962759
Length = 633
Score = 25.8 bits (54), Expect = 4.9
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 41 ARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVH 178
A +RYC + + +S+F R P + DL K V + C H
Sbjct: 407 AEIFRYCLDGTHERSKFLRAAA-PSVNEDDLIKLANQVSLYSGCTH 451
>09_06_0198 - 21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 71 PYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSE 214
P P S G PD +++F R D P ++VS +Y+ SS+
Sbjct: 1053 PSPGSFSFGGDPDTFLQVFIWNGTRPVSRDGPWTGYMVSSQYQANSSD 1100
>06_03_0175 +
17553447-17553667,17555313-17555467,17555625-17555713,
17556253-17556376,17556920-17556989,17557345-17557441,
17559365-17559427,17559504-17559581,17559675-17559737
Length = 319
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 68 YSYNIDNISLVGAPLCSPQS 9
Y Y D I L+G PLC P S
Sbjct: 168 YLYPYDEIVLLGIPLCVPWS 187
>09_05_0015 -
20083143-20083308,20083645-20084017,20084362-20084675,
20085164-20085512,20085678-20085837,20086307-20086618,
20086700-20086820,20087225-20087277
Length = 615
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 119 RIFDLGKKRATVDDFPL 169
R+ DLGK+RA + D PL
Sbjct: 76 RLEDLGKRRARLQDIPL 92
>07_03_0572 -
19604643-19604745,19604947-19605629,19605786-19606284,
19606370-19606878,19607110-19607148,19607347-19607411,
19609081-19609201,19610229-19610315,19611096-19611179,
19611925-19612175,19612869-19612962,19613043-19613284,
19614187-19614505
Length = 1031
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 29 GRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIF 127
GRR R R C+ + P++RF R V D F
Sbjct: 49 GRRGRRPRRACEEEEKPQARFRRVVADNSYSAF 81
>06_01_1064 - 8609162-8610583
Length = 473
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 100 TPTKPRFRIRFILTISITSRWSAPHCVLHK 11
+P K RFR++ ++ + SA HCV +
Sbjct: 266 SPAKARFRLKHVVRTLTGAEDSAHHCVFQE 295
>06_01_1060 + 8522131-8523606
Length = 491
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 100 TPTKPRFRIRFILTISITSRWSAPHCVLHK 11
+P K RFR++ ++ + SA HCV +
Sbjct: 284 SPAKARFRLQHVVRTLTAAEDSAYHCVFQE 313
>05_03_0363 - 12983243-12983304,12983526-12983658
Length = 64
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -1
Query: 215 PQNSAARTHQTLSARIVGSHPLSLSFCP 132
P A TH L A V S PL +FCP
Sbjct: 21 PALHPASTHPALIAVSVASLPLPQNFCP 48
>03_04_0169 -
17959262-17959304,17959441-17959532,17959682-17959759,
17959938-17960075,17960174-17960302,17960556-17960685,
17960797-17960974,17961177-17961315,17961399-17961488,
17961633-17961794,17961966-17962130,17962250-17962387,
17962827-17963006,17963405-17963533,17963878-17964113,
17964233-17964395,17965260-17965628,17965724-17965828
Length = 887
Score = 25.4 bits (53), Expect = 6.5
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +1
Query: 7 GLCGEHNGAPTS 42
G+CGEH G P+S
Sbjct: 845 GICGEHGGEPSS 856
>02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,
8509204-8509553,8509631-8509729,8509811-8510105,
8510200-8510405,8510498-8510689,8510766-8511163,
8511258-8511444,8511473-8511528,8511800-8511872,
8512012-8512872,8514353-8514778
Length = 1134
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 32 RRPARCYRYCKNKPYPKSRFCRGVPDPKIR 121
R P++ +RY + P P++R R P P I+
Sbjct: 1026 RAPSQDWRYTPDVPRPRTRGRRRGPSPAIQ 1055
>01_07_0232 +
42182942-42183490,42183593-42183661,42184320-42184451,
42184547-42184600,42184714-42184758,42185383-42185522,
42185777-42185902,42185985-42186002,42186631-42187276,
42188121-42188843
Length = 833
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -2
Query: 163 EVIHCRSLFAQVENTDLWVRHTPTKP 86
+V+HC S + + LW+R P P
Sbjct: 473 DVVHCPSCSSYLHPPRLWLRAAPESP 498
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,173,894
Number of Sequences: 37544
Number of extensions: 136637
Number of successful extensions: 346
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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