Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_H03
         (549 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0081 - 18924353-18924462,18925068-18925187,18925569-189260...    31   0.61 
09_01_0082 - 1182976-1182989,1183044-1183347,1184259-1184357,118...    30   1.4  
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213...    29   1.8  
01_06_1200 - 35362412-35362432,35362526-35362715,35362799-353628...    29   3.2  
04_04_0792 - 28091597-28091675,28091853-28091908,28092151-280922...    28   5.6  

>11_05_0081 -
           18924353-18924462,18925068-18925187,18925569-18926086,
           18927392-18927471,18927680-18927782,18928084-18928295,
           18928392-18929210,18929331-18929444,18929935-18929983,
           18930115-18930271,18930354-18930807,18930938-18931147
          Length = 981

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 274 VNHLSTFPAFTLAFHCFPIVFLLFNFYGY 360
           +N L+ F AF  + HCF IV+ L   +GY
Sbjct: 561 LNRLTGFNAFWYSHHCFVIVYALLIVHGY 589


>09_01_0082 -
           1182976-1182989,1183044-1183347,1184259-1184357,
           1184458-1184595,1184698-1184820,1184962-1185030
          Length = 248

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = +1

Query: 148 YTFTGKEPSTIELEEWEAFLNSNISEVMDGDVESLTQLNMVSVNHLSTFPAFTLAFHCFP 327
           Y FT  +P+   L+E EAFL+ N +E++   +E      M  ++ L  F A  L  + +P
Sbjct: 138 YNFTAFQPAIDTLKEVEAFLSENPTEIITIFIEDYVHSTM-GLSKL--FTAADLTKYWYP 194

Query: 328 I 330
           I
Sbjct: 195 I 195


>08_02_1442 +
           27120604-27120890,27121029-27121166,27121280-27121382,
           27121877-27122036,27122927-27123114,27123203-27124770,
           27124882-27125869,27126595-27127098,27127347-27127433,
           27127753-27127821,27128012-27128041
          Length = 1373

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 151 TFTGKEPSTIELEEWEAFLNSNISEVMDGDVESLTQLNMVSVNHL 285
           T  G   S  +++EWEA   SNI + + G  E L+ L + S  HL
Sbjct: 613 TMGGLMSSKHQVKEWEAIARSNIGDSVKGKDEILSILKL-SYKHL 656


>01_06_1200 -
           35362412-35362432,35362526-35362715,35362799-35362899,
           35362985-35363116,35363204-35363302,35363493-35363568,
           35363649-35363941,35364032-35364160,35364332-35364480,
           35364562-35364633,35364728-35364776,35365039-35365107,
           35365201-35365256,35365357-35365429,35365508-35365584,
           35365847-35365934,35366086-35366259,35366358-35366473,
           35366681-35366984,35367084-35367146,35367224-35367286,
           35367393-35367506,35368672-35368675,35368894-35368952,
           35369024-35369098,35369691-35369798,35372331-35372792
          Length = 1071

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 8/24 (33%), Positives = 20/24 (83%)
 Frame = -1

Query: 306 RKRREGAQVVNTHHIQLCQRFNIT 235
           R+RR G++++ +H +Q+C+R+ ++
Sbjct: 147 RRRRSGSRILESHIMQICERWIVS 170


>04_04_0792 -
           28091597-28091675,28091853-28091908,28092151-28092211,
           28092290-28092363,28092865-28092945,28093127-28093201,
           28093276-28093395,28093486-28093566,28093644-28093712,
           28094057-28094128,28094220-28094362,28094452-28094566,
           28094651-28094774,28095124-28095476,28096035-28096374,
           28096914-28097124,28097209-28097482,28097570-28097788,
           28097868-28098004,28098117-28098375
          Length = 980

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 184 LEEWEAFLNSNISEVMDGDVESLTQL 261
           L E +AF+N N+  + D D  SL QL
Sbjct: 696 LSESDAFINKNLEGIQDQDFRSLFQL 721


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,476,628
Number of Sequences: 37544
Number of extensions: 207409
Number of successful extensions: 432
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)