Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_H03
         (549 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92782-3|CAB07189.2|  326|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AF026202-2|AAB71242.2|  501|Caenorhabditis elegans Hypothetical ...    27   6.7  

>Z92782-3|CAB07189.2|  326|Caenorhabditis elegans Hypothetical
           protein F14F8.4 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 308 SVNAGKVLKWLTLTIFNCVRDSTSPSITSL 219
           S N GK LK L   + NCVR +T+P   S+
Sbjct: 296 SFNLGKFLKILFGGVDNCVRSTTAPVAFSI 325


>AF026202-2|AAB71242.2|  501|Caenorhabditis elegans Hypothetical
           protein C10E2.2 protein.
          Length = 501

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = -1

Query: 330 NRKTMES*RKRREGAQVVNTHHIQLCQRFNITIHNLTYIRVKKCXXXXXXXXXXXFTCKC 151
           N   +E  +KRR   QVV+  H +L  + N+ + N++   +K             +T KC
Sbjct: 214 NGVDIEKMKKRRMTPQVVDKFHEKLGLKVNVDVLNVSESSLKSENIREIQKGGTLYTLKC 273

Query: 150 IITL 139
           + T+
Sbjct: 274 LKTV 277


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,231,780
Number of Sequences: 27780
Number of extensions: 201392
Number of successful extensions: 515
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)