Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_H02
         (552 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.7  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.3  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +2

Query: 182 YLGGSALITTCSKD*YP-FSQWTTTTKYRTIL 274
           Y+GG+     CS D  P  +  T+T +Y  I+
Sbjct: 676 YIGGNPFNCNCSMDWLPGINNQTSTREYPRIM 707


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 464 SVIQFIRILFCKINTRDILIHPQTTFCYL 550
           ++I    +L C +NT  +L  P T  C L
Sbjct: 554 TIILLAGVLVCYLNTFLLLATPTTVTCIL 582


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 464 SVIQFIRILFCKINTRDILIHPQTTFCYL 550
           ++I    +L C +NT  +L  P T  C L
Sbjct: 644 TIILLAGVLVCYLNTFLLLATPTTVTCIL 672


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +3

Query: 12  ITFIDDHSDDAFLSFKT*SEQIRQIRIILEKKI*NSEEECKQSI 143
           +TF+D     AF+S +     I  I +++       +E+  QSI
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGVKEQTLQSI 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,349
Number of Sequences: 438
Number of extensions: 2570
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)