Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_H01
         (497 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0805 + 24775346-24775543,24775643-24775858,24775930-247759...    27   6.3  
05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603     27   6.3  
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748...    27   6.3  
03_02_0896 - 12233706-12233801,12234005-12234181,12234741-122348...    27   6.3  

>06_03_0805 +
           24775346-24775543,24775643-24775858,24775930-24775970,
           24776510-24776551,24777019-24777055,24779796-24780092
          Length = 276

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 17/76 (22%), Positives = 34/76 (44%)
 Frame = +3

Query: 171 SYLLNEVIVMRTYTRRRPECQVIKGVRDLCRLCLQKSEETVEIFDENSDNICAALALRIM 350
           +Y++N   ++  +   RP+ +  KGV + C +C +   ++           C    L + 
Sbjct: 92  TYVINSAKIV--FLNGRPQARPGKGVTNTCEICCRSLPDSFRFCSLG----CKLATLHLD 145

Query: 351 ICVGLEVTREDSLPNM 398
           +C    ++ E SL NM
Sbjct: 146 LCRPWHLSLEVSLANM 161


>05_05_0225 - 23437454-23437793,23438348-23440573,23440771-23441603
          Length = 1132

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -2

Query: 319  LSEFSSKIST--VSSDFCRHRRQRSRTPLIT*HSGRLLVYVRITITSFNKYD 170
            L E ++KI     + D CR   + + T  I  H GR +V +R    +F+  D
Sbjct: 895  LEEITAKIKVDFTAGDLCRRFAESALTDAIRMHPGRPIVNIRCVDWTFDDKD 946


>04_04_1477 +
           33873976-33874080,33874433-33874544,33874777-33874874,
           33875548-33876261,33876348-33876518,33876955-33877011,
           33877096-33878718
          Length = 959

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = +3

Query: 276 KSEETVEIFDENSDN---ICAALALRIMICVGLEV-TREDSLPN 395
           K EETV +FD +S++    CA  A  + I  G+ V T E  LPN
Sbjct: 308 KQEETVSLFDGSSEDHQEDCAETAAAV-IQSGIRVHTEEQELPN 350


>03_02_0896 -
           12233706-12233801,12234005-12234181,12234741-12234854,
           12234928-12235006,12235372-12235533,12235957-12236079,
           12236139-12236218
          Length = 276

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 66  IYCKHKVTLNNLKFSLNIK 10
           +YC H+ T+ NLKF L ++
Sbjct: 181 VYCGHEYTVKNLKFILTVE 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,828,371
Number of Sequences: 37544
Number of extensions: 189348
Number of successful extensions: 360
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)