Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_H01
         (497 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006777-8|AAK72305.2|  367|Caenorhabditis elegans Seven tm rece...    29   1.4  
U29097-1|AAA68411.1| 1490|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z66567-8|CAA91494.1|  402|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z66561-9|CAA91462.1|  402|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AF016421-11|AAM45373.2|  417|Caenorhabditis elegans Hypothetical...    27   5.7  
Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ...    27   10.0 

>AC006777-8|AAK72305.2|  367|Caenorhabditis elegans Seven tm
           receptor protein 221 protein.
          Length = 367

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 21/55 (38%), Positives = 25/55 (45%)
 Frame = +3

Query: 297 IFDENSDNICAALALRIMICVGLEVTREDSLPNMICIECYRELSRYYAFRRKCEL 461
           IFD N D I   + L I I   +     D LPN+  I  YR    YY  R K +L
Sbjct: 278 IFDINDDVIGGIVVLCIAIYPAI-----DPLPNIFIIRDYRRALLYYVLRVKNKL 327


>U29097-1|AAA68411.1| 1490|Caenorhabditis elegans Hypothetical
           protein F18C5.3 protein.
          Length = 1490

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 300 FDENSDNICAALALRIMICVGLEVTREDSLPNMI 401
           F   SD++   LA  ++ICV  + + ED+L NM+
Sbjct: 206 FVSESDDVANRLATPLLICVERKKSNEDTLVNMM 239


>Z66567-8|CAA91494.1|  402|Caenorhabditis elegans Hypothetical
           protein ZK455.6 protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 150 SNKNCLASYLLNEVIVMRTYT-RRRPECQVIKGVRDLCRLC 269
           S+    A++    VI+   YT + +  C V K +R+LCR C
Sbjct: 29  SSCRACAAFFRRTVILKLNYTCKEKGNCTVEKSLRNLCRSC 69


>Z66561-9|CAA91462.1|  402|Caenorhabditis elegans Hypothetical
           protein ZK455.6 protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 150 SNKNCLASYLLNEVIVMRTYT-RRRPECQVIKGVRDLCRLC 269
           S+    A++    VI+   YT + +  C V K +R+LCR C
Sbjct: 29  SSCRACAAFFRRTVILKLNYTCKEKGNCTVEKSLRNLCRSC 69


>AF016421-11|AAM45373.2|  417|Caenorhabditis elegans Hypothetical
           protein F44E7.8 protein.
          Length = 417

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 168 ASYLLNEVIVMRTYTRRRPE--CQVIKGVRDLCRLCLQK 278
           A++    V++ + Y+ R+    C++ K  R LCRLC  K
Sbjct: 47  AAFFRRSVVMDKKYSCRKASQGCRIDKSERYLCRLCRYK 85


>Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical protein
            T05H10.1 protein.
          Length = 1326

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 379  SRVTSNPTHIIILSANAAQILSEFSSKISTVS 284
            S V  NPTH +++ ANA   +  F   +S +S
Sbjct: 1187 STVEVNPTHEVLVDANAENPVVSFVEALSKIS 1218


>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
           protein H43E16.1 protein.
          Length = 1203

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +1

Query: 430 GIMHLGENVNSRITS*NSTY 489
           G M   +NVNS ITS NSTY
Sbjct: 297 GTMPTDQNVNSVITSDNSTY 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,380,355
Number of Sequences: 27780
Number of extensions: 202235
Number of successful extensions: 453
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)