Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_G24
         (435 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0204 + 1611837-1611840,1611926-1612048,1614570-1614659,161...    27   5.0  
01_01_1098 - 8691312-8692430,8692640-8693509,8694522-8696105,869...    27   6.6  
08_01_0097 + 694992-695204,696449-697111,697188-697322                 27   8.7  

>03_01_0204 +
           1611837-1611840,1611926-1612048,1614570-1614659,
           1615529-1616095,1616235-1616959,1617065-1617252,
           1617331-1617778
          Length = 714

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +1

Query: 1   ARGLLIRKVVGRDFKMNKHLIIFLAVCFISVHAFVKRDAEAASTGNAFSEIEKQFVEIKK 180
           AR    + VV  D     +L+  +   F S+H  +    E  S+GN  ++IE+   +++ 
Sbjct: 315 ARPFKGKNVVESDHSPIPNLLDPIVTLFDSIHGNILNTPEFTSSGNMSNDIEQPKTDLES 374

Query: 181 Q 183
           Q
Sbjct: 375 Q 375


>01_01_1098 - 8691312-8692430,8692640-8693509,8694522-8696105,
            8696199-8696258,8696336-8696414,8696494-8696555,
            8697129-8697204,8697367-8697419,8698181-8698270,
            8698411-8698458
          Length = 1346

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 21/53 (39%), Positives = 28/53 (52%)
 Frame = -2

Query: 263  LLINLLKSSTMLLNCFLTLSGLKFSCTCFLISTNCFSISLNALPVLAASASRF 105
            ++++LLK  T L    L L  L FSC  +L      SISL+AL  + A  S F
Sbjct: 1269 VVLDLLKHGTCLRLTRL-LYCLAFSCRQYLAQGMIVSISLSALMRVEALVSAF 1320


>08_01_0097 + 694992-695204,696449-697111,697188-697322
          Length = 336

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -2

Query: 263 LLINLLKSSTMLLNCFLTLSGLKFSCTCFLISTNCFSISLNALPVLAASASRFTKA 96
           LL+N+ K  ++  N       LKFS  C  I T     ++ ALP +A +    +KA
Sbjct: 280 LLVNVAKDDSIFHNEEKLREALKFSNACGAICTTKKG-AIPALPTVAVAQELISKA 334


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,127,824
Number of Sequences: 37544
Number of extensions: 99381
Number of successful extensions: 286
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)