Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_G24
         (435 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006742-5|AAF60496.1|  239|Caenorhabditis elegans Hypothetical ...    32   0.21 
AC006742-4|AAF60495.1|  239|Caenorhabditis elegans Hypothetical ...    32   0.21 
Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z37139-11|CAO82010.1|  487|Caenorhabditis elegans Hypothetical p...    28   3.4  
Z34799-9|CAO82035.1|  487|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AY661556-1|AAV70493.1|  714|Caenorhabditis elegans acetylcholine...    28   3.4  
AF078786-4|AAC26944.4|  714|Caenorhabditis elegans Sodium:neurot...    28   3.4  

>AC006742-5|AAF60496.1|  239|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.7 protein.
          Length = 239

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = +1

Query: 7   GLLIRKVVGRDFKMNKHLIIFLAVCFISVHAFVKRDAEAASTGNAFSEIEKQFVEIK--K 180
           G  + KV   +  + K ++   A CF+++H     D  AAS     ++ ++     K  K
Sbjct: 39  GQQLEKVSLPNNSLEKLMVKHFANCFVALHTMNSLDELAASAPKFVADFKQAIGNKKTLK 98

Query: 181 QVQENFKPDNVKKQ 222
           ++ +NFK  + K+Q
Sbjct: 99  ELHDNFKSSDTKQQ 112


>AC006742-4|AAF60495.1|  239|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.3 protein.
          Length = 239

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = +1

Query: 7   GLLIRKVVGRDFKMNKHLIIFLAVCFISVHAFVKRDAEAASTGNAFSEIEKQFVEIK--K 180
           G  + KV   +  + K ++   A CF+++H     D  AAS     ++ ++     K  K
Sbjct: 39  GQQLEKVSLPNNSLEKLMVKHFANCFVALHTMNSLDELAASAPKFVADFKQAIGNKKTLK 98

Query: 181 QVQENFKPDNVKKQ 222
           ++ +NFK  + K+Q
Sbjct: 99  ELHDNFKSSDTKQQ 112


>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical protein
            C38D4.3 protein.
          Length = 1784

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = +1

Query: 106  KRDAEAASTGNAFSEIEKQFVEIKKQVQENFKPDNVKKQFNNMVDDFNKFMSSMNPNS 279
            K D E  S  N   E+E    E+K Q QEN +    +K F N  DDF     +  P +
Sbjct: 1127 KHDEEKDSEKNVVDEME----EVKDQEQENDECIESEKTFENQ-DDFEVLEDTSAPEA 1179


>Z37139-11|CAO82010.1|  487|Caenorhabditis elegans Hypothetical
           protein F34D10.9 protein.
          Length = 487

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/55 (27%), Positives = 32/55 (58%)
 Frame = +1

Query: 121 AASTGNAFSEIEKQFVEIKKQVQENFKPDNVKKQFNNMVDDFNKFMSSMNPNSEA 285
           AA+  N F++ ++    + +  +++F+    K + N  ++DFNKF++S   + EA
Sbjct: 176 AANPLNCFTKPDEDLSSLARYRRKSFR----KLRLNFQMEDFNKFLTSRPSDVEA 226


>Z34799-9|CAO82035.1|  487|Caenorhabditis elegans Hypothetical
           protein F34D10.9 protein.
          Length = 487

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/55 (27%), Positives = 32/55 (58%)
 Frame = +1

Query: 121 AASTGNAFSEIEKQFVEIKKQVQENFKPDNVKKQFNNMVDDFNKFMSSMNPNSEA 285
           AA+  N F++ ++    + +  +++F+    K + N  ++DFNKF++S   + EA
Sbjct: 176 AANPLNCFTKPDEDLSSLARYRRKSFR----KLRLNFQMEDFNKFLTSRPSDVEA 226


>AY661556-1|AAV70493.1|  714|Caenorhabditis elegans
           acetylcholine/choline transporter protein.
          Length = 714

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -2

Query: 278 ELGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFLISTNCFSI 150
           ++  +L+++++ S   L+ C LT S + F+C  F IS + F I
Sbjct: 367 DIWLVLIVDVIVS---LVGCLLTFSAIGFTCYEFAISLDKFHI 406


>AF078786-4|AAC26944.4|  714|Caenorhabditis elegans
           Sodium:neurotransmitter symporterfamily protein 6
           protein.
          Length = 714

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = -2

Query: 278 ELGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFLISTNCFSI 150
           ++  +L+++++ S   L+ C LT S + F+C  F IS + F I
Sbjct: 367 DIWLVLIVDVIVS---LVGCLLTFSAIGFTCYEFAISLDKFHI 406


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,550,966
Number of Sequences: 27780
Number of extensions: 101500
Number of successful extensions: 454
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)