Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_G23
(476 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 27 1.1
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 27 1.5
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 27 1.5
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi... 27 1.9
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 26 2.6
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|... 26 3.4
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 26 3.4
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 26 3.4
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 26 3.4
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 25 4.5
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 25 7.9
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 27.5 bits (58), Expect = 1.1
Identities = 8/12 (66%), Positives = 12/12 (100%)
Frame = -1
Query: 386 HLYLFEELLICC 351
H+YLFE++L+CC
Sbjct: 451 HVYLFEKILLCC 462
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 27.1 bits (57), Expect = 1.5
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Frame = +1
Query: 85 SNSNELDEKTHIIFLERLRALQAKAGIKTESTLST-QARTP-VGDNRTLMDAMNENALPR 258
++ NE DE+ FLER R K + + LS QA+ G+ ++ A
Sbjct: 465 NSKNETDEEKRKSFLERNRQAALKCRQRKKQWLSNLQAKVEFYGNENEILSAQVSALREE 524
Query: 259 THSIDPQLELHTTQAMSQKNEAAV 330
S+ L H +++ N AAV
Sbjct: 525 IVSLKTLLIAHKDCPVAKSNSAAV 548
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 27.1 bits (57), Expect = 1.5
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +1
Query: 70 ENIDVSNSNELDEKTHII-FLERLRALQAKAGIKTESTLSTQARTPVGDNRTLMDAMNEN 246
EN+D+ N+ LD++TH+ L L I ++ T +Q + + ++ +L +
Sbjct: 502 ENLDIENNIALDKRTHLASLLSSLLGSLRDKNIGSKDTTVSQIASILSEDLSL-----KR 556
Query: 247 ALPRTHSIDPQLE 285
+ + H I P LE
Sbjct: 557 EIIQAHGILPLLE 569
>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 26.6 bits (56), Expect = 1.9
Identities = 23/72 (31%), Positives = 32/72 (44%)
Frame = +1
Query: 46 IYKHDYKPENIDVSNSNELDEKTHIIFLERLRALQAKAGIKTESTLSTQARTPVGDNRTL 225
I K+DY PEN+ + NE D+ +IF AG+ L + TP N +
Sbjct: 33 ILKNDYSPENVSLC-QNESDQ--GVIFSNLNDQTLQDAGLTHGQMLYLRLGTP---NSDI 86
Query: 226 MDAMNENALPRT 261
+ NE AL T
Sbjct: 87 ASSNNEPALTVT 98
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 2.6
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 64 KPENIDVSNSNELDEKTHIIFLERLRALQAKAGIKTESTLS 186
K ++ +N+NE ++H +F+ L + G STL+
Sbjct: 668 KNRSVAATNANEHSSRSHSVFMLHLNGSNSTTGETCRSTLN 708
>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 3.4
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 120 YFLGTA*SIAG*SRYKNGIDPVYPGAYAGRR*PN 221
Y G I+G SR +N +DP Y AGRR PN
Sbjct: 84 YLAGRLEDISGQSR-RNYVDPYYEELNAGRR-PN 115
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 3.4
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +1
Query: 163 IKTESTLSTQARTPVGDNRTLMDAMNENALPRTHSIDPQLELHTTQAMSQKNEAAVD 333
IK++ T+S+ TP+ + + + + HS+ EL + ++ KNE+ D
Sbjct: 231 IKSKDTVSSGDSTPLSGSSSSKGMLMSMSTSENHSLSSNPELSNSNLLA-KNESPAD 286
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.8 bits (54), Expect = 3.4
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +1
Query: 46 IYKHDYKPENIDV-SNSNELDEKTHIIFLERLRALQAKAGIKTESTLSTQARTPV 207
IY HDY +N+ V S E TH F+ + A +G S S Q T +
Sbjct: 36 IYFHDYNKKNVSVISGGGAGHEPTHSSFVGKGMLTAAVSGSIFASPSSKQIYTGI 90
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 25.8 bits (54), Expect = 3.4
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +1
Query: 139 RALQAKAGIKTESTLSTQARTPVGDNRTLMDAMNENALPRTHSIDPQLELHTTQAMSQKN 318
RAL + + + A TP R L A+ +N +P + HT Q SQK+
Sbjct: 50 RALARRNSLARRRSNVFSATTPRDILRMLSRALAKNPVPSPAESESSERRHTPQTNSQKS 109
Query: 319 E 321
+
Sbjct: 110 Q 110
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 25.4 bits (53), Expect = 4.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 31 LGSMPIYKHDYKPENIDVSNSNELDEKTHII 123
+ S+ I H PE+ D S N++DE H I
Sbjct: 385 ISSVQILTHCKLPESQDFSMHNDVDELLHTI 415
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 24.6 bits (51), Expect = 7.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 428 IERAIESKCRGDSGHLYLFEELLICCNL 345
+ RAI + C D G LY E L C++
Sbjct: 204 LRRAINNLCGPDEGVLYFLEVLKQICSV 231
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.126 0.343
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,652,238
Number of Sequences: 5004
Number of extensions: 29373
Number of successful extensions: 63
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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