Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_G23
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1323 + 35700147-35701649                                         27   5.9  
12_02_0223 + 15868889-15869182                                         27   7.8  
03_02_0178 + 6195402-6199158,6199438-6200003                           27   7.8  

>02_05_1323 + 35700147-35701649
          Length = 500

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -2

Query: 118 YAFSHPARCCCSRRYFQ---ACNRVCKWASNRVSSARQPRL 5
           +A++  A  C +RR F    +C  VC W S   +  R  RL
Sbjct: 130 HAYASCALLCSARRVFDVNVSCRDVCSWTSLLTAYGRAARL 170


>12_02_0223 + 15868889-15869182
          Length = 97

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 362 LICCNLSLRASTAASFFCDIAWVVCNSSC 276
           L+  + SL A  AA  FC     +CN+SC
Sbjct: 23  LVVLSSSLVAPAAAKMFCSNCDDICNASC 51


>03_02_0178 + 6195402-6199158,6199438-6200003
          Length = 1440

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -1

Query: 362  LICCNLSLRASTAASFFCDIAWVVCNSSCG 273
            ++C N  + ++T +   CD+    C++ CG
Sbjct: 1118 IVCSNFDMASNTCSWVGCDVCLHWCHTDCG 1147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.126    0.343 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,973,013
Number of Sequences: 37544
Number of extensions: 202704
Number of successful extensions: 419
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)