Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_G23
         (476 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    28   0.045
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    27   0.14 
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    21   9.0  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   9.0  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 28.3 bits (60), Expect = 0.045
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 70  ENIDVSNSNELDEKTHIIFLERLR 141
           E ID++N  EL ++TH+ F   LR
Sbjct: 376 ETIDINNGAELMQETHVCFFSLLR 399



 Score = 26.2 bits (55), Expect = 0.18
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 100 LDEKTHIIFLERLRALQAKAGIKTESTLST 189
           ++EKT + +LE L AL+ + G  T+    T
Sbjct: 45  VEEKTQLRYLEELNALRTELGASTKLATDT 74


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 26.6 bits (56), Expect = 0.14
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 67  PENIDVSNSNELDEKTHIIFLERLRALQAKAGIK 168
           P NID  N+N+LD K     +  LRAL     +K
Sbjct: 368 PRNIDEYNNNDLDTKKWNNKISALRALNDLYNVK 401


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 210 R*PNPDGRHERERIAEDSQHRP 275
           R P+P  R E E  AE   +RP
Sbjct: 82  RPPHPRLRREAESEAEPGNNRP 103


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 159 RYKNGIDPV 185
           RY NGIDP+
Sbjct: 208 RYDNGIDPL 216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.126    0.343 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,096
Number of Sequences: 438
Number of extensions: 2284
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.4 bits)