Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_G22
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   269   2e-73
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    30   0.31 
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    29   0.40 
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...    25   6.6  
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...    25   6.6  
SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces p...    25   8.7  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  269 bits (660), Expect = 2e-73
 Identities = 116/181 (64%), Positives = 148/181 (81%)
 Frame = -1

Query: 616 KEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 437
           KE++I+D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD++GH+GLG+KC+KEVA
Sbjct: 63  KEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVA 121

Query: 436 TAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAP 257
           TAIRGAII+ KLS++P+RRGYWG  +G PHTVP KV+GKCGSVTVRL+PAPRG G+V+AP
Sbjct: 122 TAIRGAIIMGKLSIMPIRRGYWGTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAP 181

Query: 256 VPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSD 77
           V K+ LQ+AG++DCYT +RGST TLGNF              LTP+LW + P  ++P  +
Sbjct: 182 VTKRFLQLAGIEDCYTQSRGSTKTLGNFVKAAFAAASLTYGILTPNLWAERPFGQTPIEE 241

Query: 76  F 74
           +
Sbjct: 242 Y 242


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +2

Query: 104 DISPQVRCQICVSLGNGC---ICSFRKVAKS 187
           D   Q+ C++CV + NGC   IC F  V+ S
Sbjct: 68  DDQKQIFCKLCVDICNGCSTPICEFNAVSNS 98


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 28/118 (23%), Positives = 50/118 (42%)
 Frame = -1

Query: 547 VQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWG 368
           V  QTR G+         +G+ NG  G G   ++  + A + +   A  +++ + R Y  
Sbjct: 235 VVNQTRKGKIASMYVLTVVGNRNGVAGFGEGKAESYSLAYKQSCGRAVKNMVYIPR-Y-- 291

Query: 367 NKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGS 194
                  TV   +  K  +V + L   P G G+   P+  ++ + AG++D      GS
Sbjct: 292 ----DKRTVYGVIHKKFHAVRLTLRSRPAGFGLRCNPILHEICRCAGIKDISGEILGS 345


>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 255 TGADTIPVPRGAGINLTVTE 314
           TG   I +P+G G+ L++TE
Sbjct: 231 TGKSWISLPKGKGVKLSITE 250


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 255 TGADTIPVPRGAGINLTVTE 314
           TG   I +P+G G+ L++TE
Sbjct: 231 TGKSWISLPKGKGVKLSITE 250


>SPCC1281.08 |wtf11|meu24|wtf element Wtf11|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
 Frame = +2

Query: 137 VSLGNGCICSFRKVAKSASGSTSRSVAILNTSHLKQLLGNRGRHNSSTTGSG-DQSN 304
           + L  G    +    +S   S S S  ++N      L      HN STT  G D SN
Sbjct: 30  IDLEKGLPLKYNSENESGLPSNSASSYLINPDPTMDLEAQTFNHNESTTSVGHDNSN 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,780
Number of Sequences: 5004
Number of extensions: 53782
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)