Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_G22
(616 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 279 1e-75
07_01_0756 + 5819367-5820038,5820847-5821005 272 1e-73
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 108 4e-24
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 1e-05
09_04_0226 - 15859439-15860377 32 0.31
01_05_0739 + 24807181-24809121 30 1.3
06_03_0267 + 18970578-18972464 28 6.8
04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163 28 6.8
06_03_0637 - 22995831-22996667,22997200-22997694 27 8.9
05_05_0026 + 21645845-21647404 27 8.9
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 279 bits (684), Expect = 1e-75
Identities = 127/181 (70%), Positives = 150/181 (82%)
Frame = -1
Query: 616 KEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 437
KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVA
Sbjct: 73 KEHQIVETLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVA 131
Query: 436 TAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAP 257
TAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPCKVTGKCGSVTVR++PAPRG+GIV+A
Sbjct: 132 TAIRGAIILAKLSVVPVRRGYWGNKIGQPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAR 191
Query: 256 VPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSD 77
VPKK+LQ AG++D +TS+RGST TLGNF +LTPD WRD KSP+ +
Sbjct: 192 VPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPDFWRDTKFVKSPFQE 251
Query: 76 F 74
+
Sbjct: 252 Y 252
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 272 bits (667), Expect = 1e-73
Identities = 124/181 (68%), Positives = 149/181 (82%)
Frame = -1
Query: 616 KEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 437
KE +I++ + P L DEV+KI PVQKQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVA
Sbjct: 76 KEHQIVEQLV-PGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVA 134
Query: 436 TAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAP 257
TAIRGAIILAKLSV+PVRRGYWGNKIGKPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A
Sbjct: 135 TAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAH 194
Query: 256 VPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPYSD 77
VPKK+LQ AG++D +TS+RGST TLGNF +LTPD WR+ K+P+ +
Sbjct: 195 VPKKVLQFAGIEDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLTPDFWRETRFIKTPFQE 254
Query: 76 F 74
+
Sbjct: 255 Y 255
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 108 bits (259), Expect = 4e-24
Identities = 58/111 (52%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Frame = -1
Query: 502 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG-KPHTVPCKVT 326
FV +GD + HI LGVKC+K AT + GAIILA + G I KPHTV CKV
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA---MFRCAEGATRETISRKPHTVSCKVA 56
Query: 325 GKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGNF 173
K GSVTVR++ P G+ +V+ VPKK+L+ AG++D +TS+RGST TL NF
Sbjct: 57 DKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLSNF 107
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = -1
Query: 574 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 395
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 394 LPV 386
+ V
Sbjct: 231 VTV 233
>09_04_0226 - 15859439-15860377
Length = 312
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -3
Query: 293 PRSPWYWNCVCPCSQEVASNGWCSGLLHFCSW--IHW 189
PR Y+ C+ PC SN + SG+ + SW + W
Sbjct: 187 PRRDLYYGCMVPCDYVRGSNEYMSGMGYLLSWDLVEW 223
>01_05_0739 + 24807181-24809121
Length = 646
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = +2
Query: 110 SPQVRCQICVSLGNGCICSFRKVAKSASGST 202
S + R + CV G G C F AKSA GST
Sbjct: 474 SARGRTEYCVRHGGGKRCKFEGCAKSAQGST 504
>06_03_0267 + 18970578-18972464
Length = 628
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +2
Query: 110 SPQVRCQICVSLGNGCICSFRKVAKSASGST 202
S + R CV G G C F +KSA GST
Sbjct: 457 SARGRTDCCVRHGGGKRCQFTGCSKSAQGST 487
>04_04_0114 + 22861300-22861476,22864952-22864969,22865187-22867163
Length = 723
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 110 SPQVRCQICVSLGNGCICSFRKVAKSASGST 202
S + + +C+S G G C F +K A GST
Sbjct: 439 SAEGKAGLCISHGGGRRCQFPDCSKGAQGST 469
>06_03_0637 - 22995831-22996667,22997200-22997694
Length = 443
Score = 27.5 bits (58), Expect = 8.9
Identities = 25/84 (29%), Positives = 34/84 (40%)
Frame = -1
Query: 439 ATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 260
A A++ + VL + GYWGN I P KV+ G V + G
Sbjct: 288 AAAVKLCFFASARQVLGLETGYWGNAI-----FPVKVSAAAGEVAASSVIELVGV----- 337
Query: 259 PVPKKLLQMAGVQDCYTSARGSTG 188
V + +MAG +C A G TG
Sbjct: 338 -VREAKRRMAG--ECLRWAEGRTG 358
>05_05_0026 + 21645845-21647404
Length = 519
Score = 27.5 bits (58), Expect = 8.9
Identities = 9/31 (29%), Positives = 13/31 (41%)
Frame = -3
Query: 290 RSPWYWNCVCPCSQEVASNGWCSGLLHFCSW 198
R PW+ C CP + + W + C W
Sbjct: 47 RPPWW--CACPVCEAYVTASWAREFDNLCDW 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,337,693
Number of Sequences: 37544
Number of extensions: 389176
Number of successful extensions: 995
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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