Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_G22
(616 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 284 4e-77
Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z49126-7|CAD56566.1| 392|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z49126-6|CAA88942.2| 530|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z49066-3|CAD56555.1| 392|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z49066-2|CAD56554.1| 530|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 28 4.6
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 28 4.6
Z50109-6|CAA90439.2| 344|Caenorhabditis elegans Hypothetical pr... 28 6.1
AC006617-12|AAF39774.1| 324|Caenorhabditis elegans Serpentine r... 28 6.1
Z69788-8|CAA93644.3| 483|Caenorhabditis elegans Hypothetical pr... 27 8.1
AC006794-1|AAK68504.1| 407|Caenorhabditis elegans Hypothetical ... 27 8.1
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 284 bits (696), Expect = 4e-77
Identities = 136/178 (76%), Positives = 148/178 (83%)
Frame = -1
Query: 616 KEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 437
KEFEIID L +L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVA
Sbjct: 86 KEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVA 144
Query: 436 TAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAP 257
TAIRGAI+ AKL+V+PVRRGYWGNKIG PHTVPCKVTGKC SV VRLIPAPRGTGIVSAP
Sbjct: 145 TAIRGAIVAAKLAVVPVRRGYWGNKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAP 204
Query: 256 VPKKLLQMAGVQDCYTSARGSTGTLGNFXXXXXXXXXXXXXYLTPDLWRDIPLTKSPY 83
VPKKLL MAG++DCYT+A+GST TLGNF YLTPDLW++ L KSPY
Sbjct: 205 VPKKLLHMAGIEDCYTAAKGSTATLGNFAKATYAALQRTYSYLTPDLWKEEALEKSPY 262
>Z81053-4|CAB02879.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 322 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 191
+C + V PRG G+ P K+ + G++D Y GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258
>Z78063-7|CAB01506.1| 418|Caenorhabditis elegans Hypothetical
protein E02A10.1 protein.
Length = 418
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -1
Query: 322 KCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGST 191
+C + V PRG G+ P K+ + G++D Y GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258
>Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical
protein T21B6.3 protein.
Length = 821
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 172 QSCQECQWIHEQKCSNPEHQPFEATSWEQGQTQFQ 276
Q Q+ Q +Q+ NP+ QP + T + Q Q Q Q
Sbjct: 299 QQQQQQQQQQQQRQQNPQQQPQQTTQFGQSQIQLQ 333
>Z49126-7|CAD56566.1| 392|Caenorhabditis elegans Hypothetical
protein DH11.5b protein.
Length = 392
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 167 FRKVAKSASGSTSRSVAILNTSHLKQLLGNRGRHNSSTTGSGDQSNCD*T 316
F A S+S +T+ + ++ + HL L + HN TTG+ D T
Sbjct: 49 FTVTATSSSTTTTTTNSLSSNHHLPLHLHHHHHHNGMTTGTSSMGQIDGT 98
>Z49126-6|CAA88942.2| 530|Caenorhabditis elegans Hypothetical
protein DH11.5a protein.
Length = 530
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 167 FRKVAKSASGSTSRSVAILNTSHLKQLLGNRGRHNSSTTGSGDQSNCD*T 316
F A S+S +T+ + ++ + HL L + HN TTG+ D T
Sbjct: 49 FTVTATSSSTTTTTTNSLSSNHHLPLHLHHHHHHNGMTTGTSSMGQIDGT 98
>Z49066-3|CAD56555.1| 392|Caenorhabditis elegans Hypothetical
protein DH11.5b protein.
Length = 392
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 167 FRKVAKSASGSTSRSVAILNTSHLKQLLGNRGRHNSSTTGSGDQSNCD*T 316
F A S+S +T+ + ++ + HL L + HN TTG+ D T
Sbjct: 49 FTVTATSSSTTTTTTNSLSSNHHLPLHLHHHHHHNGMTTGTSSMGQIDGT 98
>Z49066-2|CAD56554.1| 530|Caenorhabditis elegans Hypothetical
protein DH11.5a protein.
Length = 530
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +2
Query: 167 FRKVAKSASGSTSRSVAILNTSHLKQLLGNRGRHNSSTTGSGDQSNCD*T 316
F A S+S +T+ + ++ + HL L + HN TTG+ D T
Sbjct: 49 FTVTATSSSTTTTTTNSLSSNHHLPLHLHHHHHHNGMTTGTSSMGQIDGT 98
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 551 ACTETDACRSAYAFQGVCCYR**QWTHWFGCE 456
+CTE DA ++ G C + W+ W CE
Sbjct: 934 SCTEDDASQTRRCVNGPCEHSYLTWSEWTTCE 965
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 551 ACTETDACRSAYAFQGVCCYR**QWTHWFGCE 456
+CTE DA ++ G C + W+ W CE
Sbjct: 934 SCTEDDASQTRRCVNGPCEHSYLTWSEWTTCE 965
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 28.3 bits (60), Expect = 4.6
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 551 ACTETDACRSAYAFQGVCCYR**QWTHWFGCE 456
+CTE DA ++ G C + W+ W CE
Sbjct: 934 SCTEDDASQTRRCVNGPCEHSYLTWSEWTTCE 965
>Z50109-6|CAA90439.2| 344|Caenorhabditis elegans Hypothetical
protein C09H10.8 protein.
Length = 344
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 378 PLRTGRTDNLASMMAPRIAVATSLLHFTPKPMCPLLSPI 494
PLR T+++ SM + R + + S HF M P ++P+
Sbjct: 191 PLRLSITNSIISMASMRSSRSRSASHFLEPNMSPAIAPM 229
>AC006617-12|AAF39774.1| 324|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 67 protein.
Length = 324
Score = 27.9 bits (59), Expect = 6.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +1
Query: 445 PCCTSHPNQCVHCYH 489
PC PN C+HCYH
Sbjct: 80 PCKYIGPNFCLHCYH 94
>Z69788-8|CAA93644.3| 483|Caenorhabditis elegans Hypothetical
protein F09A5.1 protein.
Length = 483
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +1
Query: 100 VGYLSTSQVSNMRKSWQW 153
+GY+ +S VS++ SWQW
Sbjct: 150 LGYIISSNVSSLTGSWQW 167
>AC006794-1|AAK68504.1| 407|Caenorhabditis elegans Hypothetical
protein Y50D4A.3 protein.
Length = 407
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -1
Query: 457 KCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKV 329
+CS E T G ++ GY+G+ +G HT+ CK+
Sbjct: 284 ECSGEDPTNPGGPGESRRIKAFKWFNGYFGSPVGPEHTLSCKM 326
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,686,514
Number of Sequences: 27780
Number of extensions: 329860
Number of successful extensions: 962
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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