Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_G21
         (577 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0472 + 22539803-22540121,22540610-22540635                       28   4.6  
08_01_0922 + 9092266-9093174                                           28   6.1  
06_01_0325 - 2366193-2366367,2367063-2367122,2367323-2367463,236...    28   6.1  
07_01_0957 + 8037825-8038199,8038775-8038948                           27   8.1  
05_07_0261 + 28764571-28764733,28766039-28766153,28766241-287663...    27   8.1  
04_03_0385 + 15239611-15239988                                         27   8.1  
04_03_0338 + 14623636-14624013                                         27   8.1  

>01_05_0472 + 22539803-22540121,22540610-22540635
          Length = 114

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 409 TSGSELGTLPEEPINEFSSGDHVSEAQR 492
           +SG+ +G L E+P +EF    +V E++R
Sbjct: 53  SSGAPVGVLLEQPADEFEEDGNVDESER 80


>08_01_0922 + 9092266-9093174
          Length = 302

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 511 PCWGSSHAALPIRGRHSRTRLSVLRA 434
           PC  + HAA P+  RH R  L+V  A
Sbjct: 38  PCDAAVHAANPLASRHDRVPLAVAMA 63


>06_01_0325 -
           2366193-2366367,2367063-2367122,2367323-2367463,
           2368175-2368288,2368444-2368475,2368736-2368793,
           2369263-2369434,2369584-2370334,2370743-2371036
          Length = 598

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +1

Query: 364 PEKTQSYRRCPKNY*TSGSELGTLPEEPINEFSSGDHVSEAQ 489
           PE+  S +  P      GSELG  P E +  FS   HV   +
Sbjct: 29  PERLLSSQASPDRGGVLGSELGLYPPERVRNFSIIAHVDHGK 70


>07_01_0957 + 8037825-8038199,8038775-8038948
          Length = 182

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 409 TSGSELGTLPEEPINEFSSGDHVSEAQR 492
           +SG+  G L E+P +EF    +V E++R
Sbjct: 56  SSGTPAGVLLEQPADEFEEDGNVDESER 83


>05_07_0261 +
           28764571-28764733,28766039-28766153,28766241-28766344,
           28766571-28766698,28766765-28767328
          Length = 357

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 84  TLFNCT*MKDIYLFNIYYKQL-VLCSSTR 167
           TLF+C    D YL   YYK   +L SSTR
Sbjct: 190 TLFDCDVTLDDYLLKSYYKTASLLASSTR 218


>04_03_0385 + 15239611-15239988
          Length = 125

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 409 TSGSELGTLPEEPINEFSSGDHVSEAQR 492
           +SG+  G L E+P +EF    +V E++R
Sbjct: 42  SSGTPAGVLLEQPADEFEEDGNVDESER 69


>04_03_0338 + 14623636-14624013
          Length = 125

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 409 TSGSELGTLPEEPINEFSSGDHVSEAQR 492
           +SG+  G L E+P +EF    +V E++R
Sbjct: 42  SSGTPAGVLLEQPADEFEEDGNVDESER 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,482,047
Number of Sequences: 37544
Number of extensions: 276210
Number of successful extensions: 569
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)