Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_G20
(481 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.08c |||traub transciption factor family protein |Schizos... 29 0.48
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz... 27 1.1
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 27 1.1
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 26 3.4
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 25 5.9
SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces pomb... 25 5.9
SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|... 25 7.8
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 25 7.8
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 25 7.8
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 25 7.8
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 28.7 bits (61), Expect = 0.48
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 36 GRNSDGEHYGNLGALNMQSSRRGTCT*SDIDQEDSWARDYEVGLTSGTSSL 188
GR + + N G+LN QSS S+ D+ D+ + D+E +S SS+
Sbjct: 71 GRKTSRQELLNSGSLNSQSSSPSEEEDSEEDENDAVSEDHENFSSSEASSI 121
>SPBC646.14c |orc5||origin recognition complex subunit
Orc5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 455
Score = 27.5 bits (58), Expect = 1.1
Identities = 21/69 (30%), Positives = 32/69 (46%)
Frame = +3
Query: 63 GNLGALNMQSSRRGTCT*SDIDQEDSWARDYEVGLTSGTSSLYNTMNMPARRNLSALHRH 242
G + L S+R T +DQ D +A + L S + L N+P + LH H
Sbjct: 101 GFIYLLEQAMSKRDYHTFLVLDQIDDFAEASTI-LFSQLAQLPIVANIPNLSIIFVLHSH 159
Query: 243 QSEAVGTLS 269
++ +GTLS
Sbjct: 160 PAQYLGTLS 168
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 27.5 bits (58), Expect = 1.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 407 AWRRGSVAA*GVTREAVRAQRLRY 478
AWRRG +A GV+R++ R R Y
Sbjct: 880 AWRRGGASAGGVSRDSPRYSRGGY 903
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.8 bits (54), Expect = 3.4
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = +3
Query: 156 EVGLTSGTSSLYNTMNMPARRNLSALHRHQSEAVGTLSGLEYDYRGLVHVFTQLKQHDRV 335
E +T T +N +RR+ S L +H + L RGL + T K+H V
Sbjct: 552 ESSITPTTPPSFNVGESLSRRSASPL-QHPRTSPDMLDKTSPCKRGLGTITTVHKKHGSV 610
Query: 336 DH 341
DH
Sbjct: 611 DH 612
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 25.0 bits (52), Expect = 5.9
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = -1
Query: 367 CQCCSTLL*WSTRSCCFSC 311
C CC+++L + ++ CF C
Sbjct: 83 CICCNSVLRYPAQAMCFRC 101
>SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 118
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = +3
Query: 312 QLKQH-DRVDHYNRVLQHWHE 371
+LK H DR+D YNR+L+ E
Sbjct: 88 RLKTHKDRIDEYNRLLESQSE 108
>SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|chr
3|||Manual
Length = 258
Score = 24.6 bits (51), Expect = 7.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 117 SDIDQEDSWARDYEVGLTSGTSSLYNT 197
S +D+ED D+E+ L G YN+
Sbjct: 10 SPLDEEDELKTDHEIDLEKGLLPEYNS 36
>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
3|||Manual
Length = 402
Score = 24.6 bits (51), Expect = 7.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 117 SDIDQEDSWARDYEVGLTSGTSSLYNT 197
S +D+ED D+E+ L G YN+
Sbjct: 10 SPLDEEDELKTDHEIDLEKGLLPEYNS 36
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 24.6 bits (51), Expect = 7.8
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +3
Query: 156 EVGLTSGTSSLYNTMNMPARRNLSALHRHQSEAVGTLSGLEYD 284
+V +T+G ++ +M R+N+ L H+S V +L+ E+D
Sbjct: 260 DVLVTAGRDAVARVWDMRTRQNVHVLSGHKS-TVASLAVQEFD 301
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 24.6 bits (51), Expect = 7.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 365 ARTP*AIKNGATAAAWRRGS 424
ARTP A+ NG+ AW GS
Sbjct: 816 ARTP-AVANGSRTPAWNTGS 834
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,731,590
Number of Sequences: 5004
Number of extensions: 30268
Number of successful extensions: 90
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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