Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_G20
         (481 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.32 
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   6.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.1  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.4 bits (53), Expect = 0.32
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
 Frame = +3

Query: 168 TSGTSSLYNTMNMPARRNLSALHRHQSEAVGTLSGLE-YDYRGLVHVFTQLKQHDRVDHY 344
           TS +  + +++  P+  +   LH  + EAV   S    +          QL   + VD  
Sbjct: 407 TSASELVESSVLFPSLDSRDELHPRELEAVNLGSACRIHGSPATTAAPPQLPTEESVDAL 466

Query: 345 NRVLQHWHELRE 380
              L HWH   E
Sbjct: 467 CNTLHHWHHCPE 478


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 173 RCQPHLVVSGPGVLLIDIASGACSASG 93
           RC  +L VSG  +  ++ +   C  SG
Sbjct: 56  RCSSYLQVSGSKIWQMERSCMCCQESG 82


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 333  VDHYNRVLQHWHELREQSKTEQQPP 407
            VDH ++  Q     ++Q + +QQ P
Sbjct: 1493 VDHSSQKTQQQQPQQQQQQQQQQQP 1517


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,671
Number of Sequences: 438
Number of extensions: 2277
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)