Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_G18
(462 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr... 37 0.008
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr... 37 0.008
AF024502-4|AAB70374.1| 675|Caenorhabditis elegans Hypothetical ... 34 0.057
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p... 33 0.075
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr... 33 0.075
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch... 33 0.075
Z54238-8|CAA90998.3| 459|Caenorhabditis elegans Hypothetical pr... 32 0.17
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 30 0.70
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 30 0.70
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 30 0.70
U41038-5|AAK29710.4| 519|Caenorhabditis elegans Hypothetical pr... 30 0.70
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos... 30 0.93
Z83113-10|CAI46598.1| 556|Caenorhabditis elegans Hypothetical p... 29 1.2
Z83113-9|CAB05548.2| 497|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z73975-5|CAA98278.2| 556|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z73975-4|CAA98279.2| 497|Caenorhabditis elegans Hypothetical pr... 29 1.2
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 29 1.6
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 29 1.6
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 29 1.6
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 1.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 1.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 1.6
U80815-6|AAO91675.1| 464|Caenorhabditis elegans Hypothetical pr... 29 2.1
U80815-5|AAO91676.1| 439|Caenorhabditis elegans Hypothetical pr... 29 2.1
U80815-4|AAO91674.1| 524|Caenorhabditis elegans Hypothetical pr... 29 2.1
U80815-3|AAK73899.1| 499|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z81560-8|CAN86623.1| 173|Caenorhabditis elegans Hypothetical pr... 28 2.8
Z81560-7|CAB76737.2| 188|Caenorhabditis elegans Hypothetical pr... 28 2.8
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot... 28 2.8
AC025716-3|AAK39618.1| 690|Caenorhabditis elegans Hypothetical ... 28 2.8
Z83120-1|CAB05583.1| 837|Caenorhabditis elegans Hypothetical pr... 28 3.7
U40427-1|AAA81467.2| 798|Caenorhabditis elegans Hypothetical pr... 28 3.7
Z92777-6|CAE17682.1| 353|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z68159-8|CAD01080.1| 310|Caenorhabditis elegans Hypothetical pr... 27 4.9
AC024826-17|AAF60789.1| 662|Caenorhabditis elegans Hypothetical... 27 8.6
>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
protein C18C4.5b protein.
Length = 1046
Score = 36.7 bits (81), Expect = 0.008
Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Frame = +2
Query: 149 LQDLEKHAQDFQKTISEQFNAIVNSKNTESLNKALKEGSDSMVQQVSELSNSLQGALTDA 328
++DL+K F + ++ + I K+ S+N ++ DS+ +++SE+ +L+
Sbjct: 153 VEDLQKQVSSFMSQMQDKNSEIQKMKDAISVNDVSRQNMDSLSEKLSEMDRTLREEQQQK 212
Query: 329 N--GKAKEVLQQARQNLERTVEDLRKAHPDVEKQATGITREAA 451
+ E L+ A E T+ L+ E+ A + E A
Sbjct: 213 SQLRSQTETLKNALSTSESTLSMLKDKLAQFEQNALDLKNENA 255
>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
protein C18C4.5a protein.
Length = 1022
Score = 36.7 bits (81), Expect = 0.008
Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Frame = +2
Query: 149 LQDLEKHAQDFQKTISEQFNAIVNSKNTESLNKALKEGSDSMVQQVSELSNSLQGALTDA 328
++DL+K F + ++ + I K+ S+N ++ DS+ +++SE+ +L+
Sbjct: 153 VEDLQKQVSSFMSQMQDKNSEIQKMKDAISVNDVSRQNMDSLSEKLSEMDRTLREEQQQK 212
Query: 329 N--GKAKEVLQQARQNLERTVEDLRKAHPDVEKQATGITREAA 451
+ E L+ A E T+ L+ E+ A + E A
Sbjct: 213 SQLRSQTETLKNALSTSESTLSMLKDKLAQFEQNALDLKNENA 255
>AF024502-4|AAB70374.1| 675|Caenorhabditis elegans Hypothetical
protein M151.2 protein.
Length = 675
Score = 33.9 bits (74), Expect = 0.057
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Frame = +2
Query: 149 LQDLEKHAQDFQKTISEQFNAIVNSKNTESLNKALKEGSDSMVQQ---VSELSNSLQGAL 319
L++LE +A+ + + EQ N +K + L K+LK + + V+EL LQ
Sbjct: 111 LKELENNAEALKTQLQEQTNDAKKAK--DELQKSLKSAAARATEATTAVAELQAKLQTVE 168
Query: 320 TDANGK---AKEVLQQARQNLERTVEDLRKAHPDVEK 421
+ + AKE L +QN ER +L+K ++++
Sbjct: 169 KEHKKEIEDAKEALAAEKQNSEREKMELKKLTEELQR 205
>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 33.5 bits (73), Expect = 0.075
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Frame = +2
Query: 110 HGAMVRRDAPNTILQDLEKHAQDFQKTISEQFNAIVNSKNTESLNKALKEGSDSMVQQVS 289
H R + ++ L++ +D Q ISE + N + + S KA + SD + +++
Sbjct: 1097 HSVSSRLEDEQALVSKLQRQIKDGQSRISELEEELENERQSRS--KADRAKSD-LQRELE 1153
Query: 290 ELSNSL--QGALTDAN-----------GKAKEVLQQARQNLERTVEDLRKAHPDVEKQAT 430
EL L QG T A K + L++A N E + LRK H D + T
Sbjct: 1154 ELGEKLDEQGGATAAQVEVNKKREAELAKLRRDLEEANMNHENQLGGLRKKHTDAVAELT 1213
>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical protein
F11C3.3 protein.
Length = 1963
Score = 33.5 bits (73), Expect = 0.075
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Frame = +2
Query: 110 HGAMVRRDAPNTILQDLEKHAQDFQKTISEQFNAIVNSKNTESLNKALKEGSDSMVQQVS 289
H R + ++ L++ +D Q ISE + N + + S KA + SD + +++
Sbjct: 1097 HSVSSRLEDEQALVSKLQRQIKDGQSRISELEEELENERQSRS--KADRAKSD-LQRELE 1153
Query: 290 ELSNSL--QGALTDAN-----------GKAKEVLQQARQNLERTVEDLRKAHPDVEKQAT 430
EL L QG T A K + L++A N E + LRK H D + T
Sbjct: 1154 ELGEKLDEQGGATAAQVEVNKKREAELAKLRRDLEEANMNHENQLGGLRKKHTDAVAELT 1213
>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
protein.
Length = 1966
Score = 33.5 bits (73), Expect = 0.075
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 13/120 (10%)
Frame = +2
Query: 110 HGAMVRRDAPNTILQDLEKHAQDFQKTISEQFNAIVNSKNTESLNKALKEGSDSMVQQVS 289
H R + ++ L++ +D Q ISE + N + + S KA + SD + +++
Sbjct: 1100 HSVSSRLEDEQALVSKLQRQIKDGQSRISELEEELENERQSRS--KADRAKSD-LQRELE 1156
Query: 290 ELSNSL--QGALTDAN-----------GKAKEVLQQARQNLERTVEDLRKAHPDVEKQAT 430
EL L QG T A K + L++A N E + LRK H D + T
Sbjct: 1157 ELGEKLDEQGGATAAQVEVNKKREAELAKLRRDLEEANMNHENQLGGLRKKHTDAVAELT 1216
>Z54238-8|CAA90998.3| 459|Caenorhabditis elegans Hypothetical
protein T28C6.7 protein.
Length = 459
Score = 32.3 bits (70), Expect = 0.17
Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = +2
Query: 143 TILQDLEKHAQDFQKTISEQFNAIVNSKNTE-SLNKALKEGSDSMVQQVSELSNSLQGAL 319
T L+D+ +D + + E+ + + +S+N E N L++ + ++V +L+ L +
Sbjct: 268 TTLEDINGKYEDERDRLQEEVDTLRSSRNWEIEQNALLRDQVAHLKEKVHKLTTELDASE 327
Query: 320 TDANGKAKEVLQQARQNLERTVEDLRKA 403
+ EV ++++ +E VEDL +A
Sbjct: 328 VAKRSLSSEV-DESKKLMELMVEDLLQA 354
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 30.3 bits (65), Expect = 0.70
Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 2/148 (1%)
Frame = +2
Query: 20 DLATSLRTRTDSDTA--MAAKCFVLFACVALAHGAMVRRDAPNTILQDLEKHAQDFQKTI 193
D A +L+ R SD A +A C L + + A A + + LQ+ EK +K +
Sbjct: 402 DNAITLKIRGMSDKARMIAKNCAELQSNLRTAQEAATKIEVEMKTLQN-EK--VKLEKEV 458
Query: 194 SEQFNAIVNSKNTESLNKALKEGSDSMVQQVSELSNSLQGALTDANGKAKEVLQQARQNL 373
+ I +N + K L + +++ + +++L + ALT+ K ++ L+Q
Sbjct: 459 EQLKFKIKQGQNATAGMKDLLKKEEALRKSLADLPLLDENALTECKLKREKYLKQLDILK 518
Query: 374 ERTVEDLRKAHPDVEKQATGITREAANR 457
++ E + A D EK++ T A +
Sbjct: 519 KKCAEAEKNAEKDREKESLKQTLSIARK 546
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical
protein T04H1.4a protein.
Length = 1298
Score = 30.3 bits (65), Expect = 0.70
Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 2/148 (1%)
Frame = +2
Query: 20 DLATSLRTRTDSDTA--MAAKCFVLFACVALAHGAMVRRDAPNTILQDLEKHAQDFQKTI 193
D A +L+ R SD A +A C L + + A A + + LQ+ EK +K +
Sbjct: 388 DNAITLKIRGMSDKARMIAKNCAELQSNLRTAQEAATKIEVEMKTLQN-EK--VKLEKEV 444
Query: 194 SEQFNAIVNSKNTESLNKALKEGSDSMVQQVSELSNSLQGALTDANGKAKEVLQQARQNL 373
+ I +N + K L + +++ + +++L + ALT+ K ++ L+Q
Sbjct: 445 EQLKFKIKQGQNATAGMKDLLKKEEALRKSLADLPLLDENALTECKLKREKYLKQLDILK 504
Query: 374 ERTVEDLRKAHPDVEKQATGITREAANR 457
++ E + A D EK++ T A +
Sbjct: 505 KKCAEAEKNAEKDREKESLKQTLSIARK 532
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 30.3 bits (65), Expect = 0.70
Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 2/148 (1%)
Frame = +2
Query: 20 DLATSLRTRTDSDTA--MAAKCFVLFACVALAHGAMVRRDAPNTILQDLEKHAQDFQKTI 193
D A +L+ R SD A +A C L + + A A + + LQ+ EK +K +
Sbjct: 388 DNAITLKIRGMSDKARMIAKNCAELQSNLRTAQEAATKIEVEMKTLQN-EK--VKLEKEV 444
Query: 194 SEQFNAIVNSKNTESLNKALKEGSDSMVQQVSELSNSLQGALTDANGKAKEVLQQARQNL 373
+ I +N + K L + +++ + +++L + ALT+ K ++ L+Q
Sbjct: 445 EQLKFKIKQGQNATAGMKDLLKKEEALRKSLADLPLLDENALTECKLKREKYLKQLDILK 504
Query: 374 ERTVEDLRKAHPDVEKQATGITREAANR 457
++ E + A D EK++ T A +
Sbjct: 505 KKCAEAEKNAEKDREKESLKQTLSIARK 532
>U41038-5|AAK29710.4| 519|Caenorhabditis elegans Hypothetical
protein F59C12.3 protein.
Length = 519
Score = 30.3 bits (65), Expect = 0.70
Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 11/125 (8%)
Frame = +2
Query: 83 VLFACVALAHGAMVRRDAPNTILQDLEKHAQDFQKTISEQFNAIVNSKNTESLNKALKEG 262
+L +A + + +R+ L + HA + +K ++E + +A E
Sbjct: 262 MLEKALANSQERLAKREKKCEELSAVVAHADELRKQLNEVWEEQHRRDQMVESERAQWEM 321
Query: 263 SDSMVQQVSELSNSLQGAL--TDANGKAKEVLQQAR---------QNLERTVEDLRKAHP 409
+ ++ SL G+L T G +++++ + Q LER V DLRK H
Sbjct: 322 EKTQLRMQLNKDTSLTGSLKRTTTPGSTEDLIRMRKSIQSKDDKIQQLERMVNDLRKTHG 381
Query: 410 DVEKQ 424
D +Q
Sbjct: 382 DKTEQ 386
>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
protein 1 protein.
Length = 1963
Score = 29.9 bits (64), Expect = 0.93
Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Frame = +2
Query: 98 VALAHGAMVRRDAPNTILQDLEKHAQDFQKTISEQFNAI------VNSKNTESLNKALKE 259
+A + A D N +L + E+ A+ + + ++ +A K ES+N+ L+E
Sbjct: 1331 IANINRARQLEDEKNALLDEKEE-AEGLRAHLEKEIHAARQGAGEARRKAEESVNQQLEE 1389
Query: 260 GSDSMVQQVSELSNSLQGALTDANG--KAKEVLQQARQNLERTVEDLRKAHPDVEKQ 424
++ V L L+ + ++K+ +QQ ++ +E++R +H D EK+
Sbjct: 1390 LRKKNLRDVEHLQKQLEESEVAKERILQSKKKIQQELEDSSMELENVRASHRDSEKR 1446
>Z83113-10|CAI46598.1| 556|Caenorhabditis elegans Hypothetical
protein K08H10.2b protein.
Length = 556
Score = 29.5 bits (63), Expect = 1.2
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +2
Query: 170 AQDFQKTISEQFNAIVNSKN--TESLNKALKEGSDSMVQQVSELSNSLQGALTDANGKAK 343
A+D+ + ++ + + +S T + +LKE + +L+N + A+ D AK
Sbjct: 107 AKDYVEDAKDKASDVWDSAKDKTSDVFDSLKEHGEDASDSAKDLANDAEDAIKDTYDSAK 166
Query: 344 EVLQQARQNLERTVEDLRKAHPDVEKQA 427
E A + + ED +++ + +QA
Sbjct: 167 EKASDAFDSAKEHGEDAQESAKEYFEQA 194
>Z83113-9|CAB05548.2| 497|Caenorhabditis elegans Hypothetical
protein K08H10.2a protein.
Length = 497
Score = 29.5 bits (63), Expect = 1.2
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +2
Query: 170 AQDFQKTISEQFNAIVNSKN--TESLNKALKEGSDSMVQQVSELSNSLQGALTDANGKAK 343
A+D+ + ++ + + +S T + +LKE + +L+N + A+ D AK
Sbjct: 107 AKDYVEDAKDKASDVWDSAKDKTSDVFDSLKEHGEDASDSAKDLANDAEDAIKDTYDSAK 166
Query: 344 EVLQQARQNLERTVEDLRKAHPDVEKQA 427
E A + + ED +++ + +QA
Sbjct: 167 EKASDAFDSAKEHGEDAQESAKEYFEQA 194
>Z73975-5|CAA98278.2| 556|Caenorhabditis elegans Hypothetical
protein K08H10.2b protein.
Length = 556
Score = 29.5 bits (63), Expect = 1.2
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +2
Query: 170 AQDFQKTISEQFNAIVNSKN--TESLNKALKEGSDSMVQQVSELSNSLQGALTDANGKAK 343
A+D+ + ++ + + +S T + +LKE + +L+N + A+ D AK
Sbjct: 107 AKDYVEDAKDKASDVWDSAKDKTSDVFDSLKEHGEDASDSAKDLANDAEDAIKDTYDSAK 166
Query: 344 EVLQQARQNLERTVEDLRKAHPDVEKQA 427
E A + + ED +++ + +QA
Sbjct: 167 EKASDAFDSAKEHGEDAQESAKEYFEQA 194
>Z73975-4|CAA98279.2| 497|Caenorhabditis elegans Hypothetical
protein K08H10.2a protein.
Length = 497
Score = 29.5 bits (63), Expect = 1.2
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +2
Query: 170 AQDFQKTISEQFNAIVNSKN--TESLNKALKEGSDSMVQQVSELSNSLQGALTDANGKAK 343
A+D+ + ++ + + +S T + +LKE + +L+N + A+ D AK
Sbjct: 107 AKDYVEDAKDKASDVWDSAKDKTSDVFDSLKEHGEDASDSAKDLANDAEDAIKDTYDSAK 166
Query: 344 EVLQQARQNLERTVEDLRKAHPDVEKQA 427
E A + + ED +++ + +QA
Sbjct: 167 EKASDAFDSAKEHGEDAQESAKEYFEQA 194
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 29.1 bits (62), Expect = 1.6
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Frame = +2
Query: 155 DLEKHAQDFQKTISEQFNAIVNSKNTESLNKALKEGSDSMVQQVSELSNSLQGALTDANG 334
DLE+ ++ + +S+ N K + + ++ + + + S++S L+D +
Sbjct: 1099 DLERRIRELEDELSQIGRG--NDKTENDITELKRKHAAEIDKLKSDISALHDKHLSDLDD 1156
Query: 335 KAKEVLQQARQNLERTVEDLRKAHPDVEKQ-ATGITRE 445
+ KE +A +NL+ +DLR ++EKQ A + RE
Sbjct: 1157 E-KEQYGKAVENLKSVEDDLRDKLNNLEKQLADSLNRE 1193
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 29.1 bits (62), Expect = 1.6
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Frame = +2
Query: 155 DLEKHAQDFQKTISEQFNAIVNSKNTESLNKALKEGSDSMVQQVSELSNSLQGALTDANG 334
DLE+ ++ + +S+ N K + + ++ + + + S++S L+D +
Sbjct: 1172 DLERRIRELEDELSQIGRG--NDKTENDITELKRKHAAEIDKLKSDISALHDKHLSDLDD 1229
Query: 335 KAKEVLQQARQNLERTVEDLRKAHPDVEKQ-ATGITRE 445
+ KE +A +NL+ +DLR ++EKQ A + RE
Sbjct: 1230 E-KEQYGKAVENLKSVEDDLRDKLNNLEKQLADSLNRE 1266
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 29.1 bits (62), Expect = 1.6
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Frame = +2
Query: 155 DLEKHAQDFQKTISEQFNAIVNSKNTESLNKALKEGSDSMVQQVSELSNSLQGALTDANG 334
DLE+ ++ + +S+ N K + + ++ + + + S++S L+D +
Sbjct: 1172 DLERRIRELEDELSQIGRG--NDKTENDITELKRKHAAEIDKLKSDISALHDKHLSDLDD 1229
Query: 335 KAKEVLQQARQNLERTVEDLRKAHPDVEKQ-ATGITRE 445
+ KE +A +NL+ +DLR ++EKQ A + RE
Sbjct: 1230 E-KEQYGKAVENLKSVEDDLRDKLNNLEKQLADSLNRE 1266
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 307 TGCVDRRKR*S*GSAPTSSPELGAHSRGSP-QGAPRRRETS 426
TG R+KR + PT SP G+ G P +G P + E+S
Sbjct: 438 TGLPSRQKRQAPEDRPTGSPPTGSPPTGRPHRGGPGKSESS 478
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +1
Query: 343 GSAPTSSPELGAHSRGS-PQGAP 408
GS PT SP G RGS P G+P
Sbjct: 414 GSPPTGSPPTGRPPRGSPPTGSP 436
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 307 TGCVDRRKR*S*GSAPTSSPELGAHSRGSP-QGAPRRRETS 426
TG R+KR + PT SP G+ G P +G P + E+S
Sbjct: 459 TGLPSRQKRQAPEDRPTGSPPTGSPPTGRPHRGGPGKSESS 499
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +1
Query: 343 GSAPTSSPELGAHSRGS-PQGAP 408
GS PT SP G RGS P G+P
Sbjct: 435 GSPPTGSPPTGRPPRGSPPTGSP 457
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 307 TGCVDRRKR*S*GSAPTSSPELGAHSRGSP-QGAPRRRETS 426
TG R+KR + PT SP G+ G P +G P + E+S
Sbjct: 444 TGLPSRQKRQAPEDRPTGSPPTGSPPTGRPHRGGPGKSESS 484
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +1
Query: 343 GSAPTSSPELGAHSRGS-PQGAP 408
GS PT SP G RGS P G+P
Sbjct: 420 GSPPTGSPPTGRPPRGSPPTGSP 442
>U80815-6|AAO91675.1| 464|Caenorhabditis elegans Hypothetical
protein W02C12.3d protein.
Length = 464
Score = 28.7 bits (61), Expect = 2.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 343 GSAPTSSPELGAHSRGSPQGAPRRRETSHRHYTRSCKPP 459
GSAPT S G S G+ +PR+ + +H+ + +PP
Sbjct: 26 GSAPTQS-YFGGGSSGAALSSPRKMQQTHQMLFGNIQPP 63
>U80815-5|AAO91676.1| 439|Caenorhabditis elegans Hypothetical
protein W02C12.3e protein.
Length = 439
Score = 28.7 bits (61), Expect = 2.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 343 GSAPTSSPELGAHSRGSPQGAPRRRETSHRHYTRSCKPP 459
GSAPT S G S G+ +PR+ + +H+ + +PP
Sbjct: 26 GSAPTQS-YFGGGSSGAALSSPRKMQQTHQMLFGNIQPP 63
>U80815-4|AAO91674.1| 524|Caenorhabditis elegans Hypothetical
protein W02C12.3c protein.
Length = 524
Score = 28.7 bits (61), Expect = 2.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 343 GSAPTSSPELGAHSRGSPQGAPRRRETSHRHYTRSCKPP 459
GSAPT S G S G+ +PR+ + +H+ + +PP
Sbjct: 86 GSAPTQS-YFGGGSSGAALSSPRKMQQTHQMLFGNIQPP 123
>U80815-3|AAK73899.1| 499|Caenorhabditis elegans Hypothetical
protein W02C12.3b protein.
Length = 499
Score = 28.7 bits (61), Expect = 2.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 343 GSAPTSSPELGAHSRGSPQGAPRRRETSHRHYTRSCKPP 459
GSAPT S G S G+ +PR+ + +H+ + +PP
Sbjct: 86 GSAPTQS-YFGGGSSGAALSSPRKMQQTHQMLFGNIQPP 123
>Z81560-8|CAN86623.1| 173|Caenorhabditis elegans Hypothetical
protein K02E2.8b protein.
Length = 173
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 264 PTPWCSRSPSYPTVYRVR*PTQTVKLRKC 350
PT WC+ S S+P ++R R P +T +C
Sbjct: 78 PTDWCAISGSFPIMFR-RYPEETTADAQC 105
>Z81560-7|CAB76737.2| 188|Caenorhabditis elegans Hypothetical
protein K02E2.8a protein.
Length = 188
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 264 PTPWCSRSPSYPTVYRVR*PTQTVKLRKC 350
PT WC+ S S+P ++R R P +T +C
Sbjct: 93 PTDWCAISGSFPIMFR-RYPEETTADAQC 120
>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
3, isoform b protein.
Length = 1178
Score = 28.3 bits (60), Expect = 2.8
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +2
Query: 209 AIVNSKNTESLNKALKEGS--DSMVQQVSELSNSLQGALTDANGKAKEVLQQARQNLERT 382
++ +K+ ++ NK K+ S D+ SE ++ L A +VL ARQ+L++T
Sbjct: 323 SVTKAKDFKATNKNKKKNSICDTRATFPSETKETISITLPAA--PTPKVLMNARQDLKKT 380
Query: 383 VEDLRKAHPDVEKQATGITREAANR 457
E + + + T R AN+
Sbjct: 381 PEKIIPKLKEAMSKCTKTLRAVANK 405
>AC025716-3|AAK39618.1| 690|Caenorhabditis elegans Hypothetical
protein Y39G10AR.10 protein.
Length = 690
Score = 28.3 bits (60), Expect = 2.8
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 10/107 (9%)
Frame = +2
Query: 146 ILQDLEKHAQDFQKTISEQFNAIVNSKNTESLNKALKEGSDSMVQQVSELSNSLQGALT- 322
+L + E+ A Q+T SE+ N + +++ + N LKE + + + S Q ALT
Sbjct: 68 MLDEAEEKASSAQETTSEENNLKILNRDLVAENLELKEMKEELRKIWLSDSKKFQEALTR 127
Query: 323 --DANGKAKE-------VLQQARQNLERTVEDLRKAHPDVEKQATGI 436
D N K ++ + Q A+ L+ E+L K + E+ + I
Sbjct: 128 ISDENTKLQKDCHELESIRQCAQFALDNCNEELEKTQTENEEHESRI 174
>Z83120-1|CAB05583.1| 837|Caenorhabditis elegans Hypothetical
protein R06A4.2 protein.
Length = 837
Score = 27.9 bits (59), Expect = 3.7
Identities = 22/106 (20%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Frame = +2
Query: 131 DAPNTILQDLEKHAQDFQKTISEQFNAIVNSKNTESLNKALKEGS--DSMVQQVSELSNS 304
+AP D+E +D +TI + + + +N ++ + KE D + ++++ N+
Sbjct: 526 EAPEHEAMDVEDDDEDLDETIPLESDEQMMDENLDTSVASKKEAMDVDELSNKMTDAVNN 585
Query: 305 LQGALTDANGKAKEVLQQARQNLERTVEDLRK-AHPDVEKQATGIT 439
LQ ++T++ + VL+ A + E L+ + +EK ++ ++
Sbjct: 586 LQKSITESTNET-TVLEGAAAAVILLSESLQNFSRVGMEKSSSDVS 630
>U40427-1|AAA81467.2| 798|Caenorhabditis elegans Hypothetical
protein F43C9.3 protein.
Length = 798
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/61 (21%), Positives = 27/61 (44%)
Frame = +2
Query: 218 NSKNTESLNKALKEGSDSMVQQVSELSNSLQGALTDANGKAKEVLQQARQNLERTVEDLR 397
++ N NKAL + + Q++ E+SN ++ A + R+ V+++
Sbjct: 105 SNSNLSKFNKALSMSTSHLTQEIEEISNKRLSMALPSSSAAPFITSLKRRETFTKVDEIT 164
Query: 398 K 400
K
Sbjct: 165 K 165
>Z92777-6|CAE17682.1| 353|Caenorhabditis elegans Hypothetical
protein C17H1.9 protein.
Length = 353
Score = 27.5 bits (58), Expect = 4.9
Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Frame = +2
Query: 182 QKTISEQFNAIVNSKNT--ESLNKALKEGSDSMVQQVSELSNSLQGALTDANGKAKEVLQ 355
++ + Q+N+ V +N E K++++ ++ +++L L+ KEV Q
Sbjct: 54 RENMLRQWNSSVAERNAAEEIHRKSVEKFNEEHKTYMAKLEKQLEKINEKGEQDVKEVEQ 113
Query: 356 QARQNLERTVEDLRKAHPDV----EKQATGITREAANRH 460
Q + E+ EDL K H + EK+ I ++ +H
Sbjct: 114 QRVKLEEQRTEDLVKHHESMANLSEKKYKEIEKQRVEQH 152
>Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical protein
C18D4.2a protein.
Length = 1817
Score = 27.5 bits (58), Expect = 4.9
Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 1/147 (0%)
Frame = +2
Query: 11 SLADLATSLRTRTDSDTAMAAKCFVLFACVALAHGAMVRRDAPNT-ILQDLEKHAQDFQK 187
S + + +S R F + +A H A R+ +T + D + ++D ++
Sbjct: 1255 STSQIRSSTMQRRSEIYQQGLSKFHMLLSMAAVHSAFDSRNTSSTEAVPDNDPDSEDSRR 1314
Query: 188 TISEQFNAIVNSKNTESLNKALKEGSDSMVQQVSELSNSLQGALTDANGKAKEVLQQARQ 367
N ++N N ++ + SDS E + S ALT N ++ Q R
Sbjct: 1315 HKEHFQNLLLNVNNMIRHSRITQNSSDSKSNCKKEQTGSSHRALT--NRLIMSLILQ-RV 1371
Query: 368 NLERTVEDLRKAHPDVEKQATGITREA 448
L +T+ LR+ + + GI ++
Sbjct: 1372 GL-KTISSLRQVSRGIRRCVDGIKSDS 1397
>Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical protein
C18D4.2a protein.
Length = 1817
Score = 27.5 bits (58), Expect = 4.9
Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 1/147 (0%)
Frame = +2
Query: 11 SLADLATSLRTRTDSDTAMAAKCFVLFACVALAHGAMVRRDAPNT-ILQDLEKHAQDFQK 187
S + + +S R F + +A H A R+ +T + D + ++D ++
Sbjct: 1255 STSQIRSSTMQRRSEIYQQGLSKFHMLLSMAAVHSAFDSRNTSSTEAVPDNDPDSEDSRR 1314
Query: 188 TISEQFNAIVNSKNTESLNKALKEGSDSMVQQVSELSNSLQGALTDANGKAKEVLQQARQ 367
N ++N N ++ + SDS E + S ALT N ++ Q R
Sbjct: 1315 HKEHFQNLLLNVNNMIRHSRITQNSSDSKSNCKKEQTGSSHRALT--NRLIMSLILQ-RV 1371
Query: 368 NLERTVEDLRKAHPDVEKQATGITREA 448
L +T+ LR+ + + GI ++
Sbjct: 1372 GL-KTISSLRQVSRGIRRCVDGIKSDS 1397
>Z68159-8|CAD01080.1| 310|Caenorhabditis elegans Hypothetical
protein C33D9.9 protein.
Length = 310
Score = 27.5 bits (58), Expect = 4.9
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 191 ISEQFNAIVNSKNTESLNKALKEGSDSMVQQVSELSNSLQGALTDANGKAK-EVLQQ 358
I+ N + N + + + KALKE + Q+S+L+ LQG L + + + K E LQQ
Sbjct: 250 IASMKNCLKNEE-IQKMQKALKEKDE----QISKLTEQLQGLLINRDKETKVEDLQQ 301
>AC024826-17|AAF60789.1| 662|Caenorhabditis elegans Hypothetical
protein Y55F3AM.14 protein.
Length = 662
Score = 26.6 bits (56), Expect = 8.6
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Frame = +1
Query: 181 PEDDQ*TI*RNRQLKEHGELEQSTEGRLRLHGAAGLRVIQQSTGCVDRRKR*S*GSAP-- 354
PE+++ + L+E E ++ E A+ L G S GS+P
Sbjct: 24 PEEEEFEEYEDELLEEEEEFDEELEELENSDSASSLVSAGSPHGSSSSNG--SHGSSPPL 81
Query: 355 -TSSPELGAHSRGSPQGAPRRR 417
SP G+ S GSP G P +R
Sbjct: 82 QVQSPSQGSGSSGSPTGQPEKR 103
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,775,571
Number of Sequences: 27780
Number of extensions: 179317
Number of successful extensions: 848
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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