Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_G17
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    25   5.6  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    25   7.4  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    25   7.4  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   9.8  
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...    25   9.8  
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...    25   9.8  

>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = +2

Query: 35  SAHNLYLCIFQSGGAPALPG--RASPPICMCACVPLF--ASRPSVCGASVRTFPIHFN 196
           S+HN YL   Q GG  ++ G  R+    C C  +  +   + P VC     T  I FN
Sbjct: 454 SSHNTYLLGKQFGGESSIEGYIRSLQRGCKCIEIDCWDGPNGPVVCHGHTFTSMIKFN 511


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 467 NNRNIILLYQVIYKDTS*CTI*YSTEYITNLFFFIQL 357
           N+  I+ L+Q +YK T  C+I Y      + F ++ L
Sbjct: 424 NDSIIVQLFQGMYKSTLECSICYQKSTAFDPFMYLTL 460


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -2

Query: 220 ISYLKKIYIKMYRKGADASTAYTR-ARRKQRHARTHTDRGRS 98
           ++ L+ I    Y+   DA     +   RKQ  A TH D G+S
Sbjct: 243 LANLRPIVKSFYKNAKDAEIKLEKLVNRKQSLALTHADLGQS 284


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/25 (48%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
 Frame = -1

Query: 485 NKLFFT--NNRNIILLYQVIYKDTS 417
           +KL F+  +++ IILLY +I K+TS
Sbjct: 912 SKLMFSPFSSQRIILLYSIINKETS 936


>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 202 IYIKMYRKGADASTAYTRARRKQRHAR 122
           +Y +M++KG     A  R RR  +H R
Sbjct: 54  LYRRMHKKGISEEHAKKRTRRTVKHQR 80


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 202 IYIKMYRKGADASTAYTRARRKQRHAR 122
           +Y +M++KG     A  R RR  +H R
Sbjct: 54  LYRRMHKKGISEEHAKKRTRRTVKHQR 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,064,985
Number of Sequences: 5004
Number of extensions: 38769
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)