Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_G17
(551 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1445 - 37405483-37406199 30 1.4
08_02_0819 - 21529913-21530064,21531016-21531082,21531284-215313... 29 2.5
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113... 29 2.5
05_07_0100 + 27679280-27680320 29 3.3
02_01_0342 + 2451314-2451345,2451536-2451730,2452548-2452587 29 3.3
08_02_0301 - 15503184-15504773,15504790-15504873 28 4.3
06_01_1201 + 10332105-10332168,10333054-10333571 28 4.3
05_02_0033 + 5847754-5847982,5848308-5848437,5849038-5849116,584... 28 4.3
09_03_0125 - 12531409-12531442,12531577-12531668,12531747-125323... 28 5.7
11_01_0300 + 2253957-2254245,2254783-2254850,2254967-2255098,225... 27 7.5
07_01_0954 - 8016804-8016905,8017409-8017469,8017543-8017649,801... 27 7.5
>01_06_1445 - 37405483-37406199
Length = 238
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +3
Query: 60 YFNRAAPPPSPAGLRPRSVCVRACLCLRRALVYAVLA 170
Y+ AAPPP+P RS R CL R L AV+A
Sbjct: 28 YYGAAAPPPAPR----RSGAHRLFCCLFRVLAVAVIA 60
>08_02_0819 -
21529913-21530064,21531016-21531082,21531284-21531373,
21531506-21531622,21532026-21532145,21532313-21533581
Length = 604
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -2
Query: 175 ADASTAYTRARRKQRHARTHTDRGRSPAGEGGGAARLKYTQI*IMSRHESYPITLR 8
A+ + + RA+ +R + +P+G GGGAA T + + + E + I+ R
Sbjct: 73 AEGTASTNRAQSAERRRSSTPSSSSTPSGGGGGAASRPRTPVRVAAATEVHGISRR 128
>06_03_0097 - 16607936-16608712,16610114-16610320,16611220-16611336,
16611409-16611690,16611811-16612294,16612791-16612929,
16613138-16613243,16613396-16613562,16613632-16613707,
16614173-16614321,16614813-16614874,16615232-16615335,
16616856-16616950,16617046-16617136,16617785-16617922
Length = 997
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = -2
Query: 178 GADASTAYTRARRKQRHARTHTDRGRSPAGEGGGAARLK 62
G+D+S + R+++++ H++ T R RSP + + K
Sbjct: 910 GSDSSIEHHRSKKRKSHSKHRTRRSRSPYADSSDSQYTK 948
>05_07_0100 + 27679280-27680320
Length = 346
Score = 28.7 bits (61), Expect = 3.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 220 ISYLKKIYIKMYRKGADASTAYTRARRKQRHARTHTD 110
I +LK++ +K DA RA+R ++HA T D
Sbjct: 287 IDFLKQLEVKRMENFVDAHVKLARAKRIKKHAGTAPD 323
>02_01_0342 + 2451314-2451345,2451536-2451730,2452548-2452587
Length = 88
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -2
Query: 262 IFLNFFMSSRTFINISYLKKIYIKMYRKGADASTAYTRAR 143
IF NF S TF+ I +LKK + ++YR ST R
Sbjct: 32 IFSNFCSSLVTFLLIEHLKKPHERLYRTHIRRSTILKTVR 71
>08_02_0301 - 15503184-15504773,15504790-15504873
Length = 557
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 154 TRARRKQRHARTHTDRGRSPAGEGGGAARLKY 59
+RA R + +A++ +D RSP G AA L+Y
Sbjct: 375 SRASRTKHYAKSKSDYVRSPIARGAVAAILRY 406
>06_01_1201 + 10332105-10332168,10333054-10333571
Length = 193
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -2
Query: 166 STAYTRARRKQRHARTHTD-RGRSPAGEGGGAARLK 62
S++ R +R++R +R H D G + G GGGA ++
Sbjct: 45 SSSRRRPQRRRRLSRRHADLTGEASGGSGGGARGIR 80
>05_02_0033 +
5847754-5847982,5848308-5848437,5849038-5849116,
5849194-5849251,5849732-5850795,5850899-5851003,
5851369-5851473
Length = 589
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -2
Query: 184 RKGADASTAYTRARRKQR--HARTHTDRGRSPAGEGGGAAR 68
RK + AS+A R R HA T T R P GGGA R
Sbjct: 18 RKSSSASSASKATSRVWRTEHAGTGTHRRAHPDERGGGAGR 58
>09_03_0125 -
12531409-12531442,12531577-12531668,12531747-12532337,
12532454-12532789,12532899-12533156,12533867-12533971,
12534625-12534702,12535464-12535542,12535649-12535723,
12535828-12535946,12536042-12537106
Length = 943
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 74 GAPALPGRASPPICMCACVPLFASRPSVCGASVRTFPIHFN 196
G +LP SP C C+ L S P ASV + + F+
Sbjct: 73 GVLSLPASGSPVACRSHCLSLSDSPPPASSASVCCYLLDFD 113
>11_01_0300 +
2253957-2254245,2254783-2254850,2254967-2255098,
2255811-2255969,2256124-2256489
Length = 337
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 65 QSGGAPALPGRASPPICMCACVPLFASRPSVCG 163
Q APALP +PP + A +P+ + P G
Sbjct: 239 QPSAAPALPPPMAPPPVLTAAMPISQAAPGTNG 271
>07_01_0954 -
8016804-8016905,8017409-8017469,8017543-8017649,
8018278-8018382,8018460-8018546,8018631-8018711,
8018872-8018944,8019288-8019400,8019695-8019788,
8020060-8020115,8020212-8020295,8020384-8020476,
8020592-8020765,8020956-8021099,8021225-8021380
Length = 509
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/36 (41%), Positives = 16/36 (44%)
Frame = +3
Query: 72 AAPPPSPAGLRPRSVCVRACLCLRRALVYAVLASAP 179
AAPP PA R R +R A VLA AP
Sbjct: 13 AAPPRPPARCRSRVAALRRTAAASAAAASCVLAEAP 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,334,667
Number of Sequences: 37544
Number of extensions: 255595
Number of successful extensions: 1120
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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