Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_G17
(551 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC064950-1|AAH64950.1| 282|Homo sapiens FAM134A protein protein. 32 1.5
AK074983-1|BAC11332.1| 543|Homo sapiens protein ( Homo sapiens ... 32 1.5
M96982-1|AAA36619.1| 240|Homo sapiens U2 snRNP auxiliary factor... 31 2.0
BC005915-1|AAH05915.1| 167|Homo sapiens U2 small nuclear RNA au... 31 2.0
BC001923-1|AAH01923.1| 240|Homo sapiens U2 small nuclear RNA au... 31 2.0
BC001177-1|AAH01177.1| 240|Homo sapiens U2 small nuclear RNA au... 31 2.0
AP001748-2|BAA95534.1| 240|Homo sapiens U2 snRNP auxiliary fact... 31 2.0
AJ627978-1|CAF29556.1| 240|Homo sapiens U2 snRNP auxiliary fact... 31 2.0
X87248-1|CAA60698.1| 341|Homo sapiens HP8 peptide protein. 30 4.7
BC111856-1|AAI11857.1| 144|Homo sapiens Unknown (protein for IM... 30 4.7
>BC064950-1|AAH64950.1| 282|Homo sapiens FAM134A protein protein.
Length = 282
Score = 31.9 bits (69), Expect = 1.5
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +2
Query: 68 SGGAPALPGRASPPICMCACVPLFASRPSV 157
SGG ALPG SPP+C+ P A PS+
Sbjct: 178 SGGLTALPGTLSPPLCLVGSDP--APSPSI 205
>AK074983-1|BAC11332.1| 543|Homo sapiens protein ( Homo sapiens
cDNA FLJ90502 fis, clone NT2RP3004075. ).
Length = 543
Score = 31.9 bits (69), Expect = 1.5
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +2
Query: 68 SGGAPALPGRASPPICMCACVPLFASRPSV 157
SGG ALPG SPP+C+ P A PS+
Sbjct: 439 SGGLTALPGTLSPPLCLVGSDP--APSPSI 466
>M96982-1|AAA36619.1| 240|Homo sapiens U2 snRNP auxiliary factor
small subunit protein.
Length = 240
Score = 31.5 bits (68), Expect = 2.0
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -2
Query: 229 FINISYLKKIYIKMYRK--GADASTAYTRARRKQRHARTHTDRGRSPAGEGGG 77
F N +LK I ++ R+ G +R+R ++R +R+ DRGR G GGG
Sbjct: 168 FCNFMHLKPISRELRRELYGRRRKKHRSRSRSRERRSRSR-DRGRGGGGGGGG 219
>BC005915-1|AAH05915.1| 167|Homo sapiens U2 small nuclear RNA
auxiliary factor 1 protein.
Length = 167
Score = 31.5 bits (68), Expect = 2.0
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -2
Query: 229 FINISYLKKIYIKMYRK--GADASTAYTRARRKQRHARTHTDRGRSPAGEGGG 77
F N +LK I ++ R+ G +R+R ++R +R+ DRGR G GGG
Sbjct: 95 FCNFMHLKPISRELRRELYGRRRKKHRSRSRSRERRSRSR-DRGRGGGGGGGG 146
>BC001923-1|AAH01923.1| 240|Homo sapiens U2 small nuclear RNA
auxiliary factor 1 protein.
Length = 240
Score = 31.5 bits (68), Expect = 2.0
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -2
Query: 229 FINISYLKKIYIKMYRK--GADASTAYTRARRKQRHARTHTDRGRSPAGEGGG 77
F N +LK I ++ R+ G +R+R ++R +R+ DRGR G GGG
Sbjct: 168 FCNFMHLKPISRELRRELYGRRRKKHRSRSRSRERRSRSR-DRGRGGGGGGGG 219
>BC001177-1|AAH01177.1| 240|Homo sapiens U2 small nuclear RNA
auxiliary factor 1 protein.
Length = 240
Score = 31.5 bits (68), Expect = 2.0
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -2
Query: 229 FINISYLKKIYIKMYRK--GADASTAYTRARRKQRHARTHTDRGRSPAGEGGG 77
F N +LK I ++ R+ G +R+R ++R +R+ DRGR G GGG
Sbjct: 168 FCNFMHLKPISRELRRELYGRRRKKHRSRSRSRERRSRSR-DRGRGGGGGGGG 219
>AP001748-2|BAA95534.1| 240|Homo sapiens U2 snRNP auxiliary factor
small subunit protein.
Length = 240
Score = 31.5 bits (68), Expect = 2.0
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -2
Query: 229 FINISYLKKIYIKMYRK--GADASTAYTRARRKQRHARTHTDRGRSPAGEGGG 77
F N +LK I ++ R+ G +R+R ++R +R+ DRGR G GGG
Sbjct: 168 FCNFMHLKPISRELRRELYGRRRKKHRSRSRSRERRSRSR-DRGRGGGGGGGG 219
>AJ627978-1|CAF29556.1| 240|Homo sapiens U2 snRNP auxiliary factor
small subunit protein.
Length = 240
Score = 31.5 bits (68), Expect = 2.0
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -2
Query: 229 FINISYLKKIYIKMYRK--GADASTAYTRARRKQRHARTHTDRGRSPAGEGGG 77
F N +LK I ++ R+ G +R+R ++R +R+ DRGR G GGG
Sbjct: 168 FCNFMHLKPISRELRRELYGRRRKKHRSRSRSRERRSRSR-DRGRGGGGGGGG 219
>X87248-1|CAA60698.1| 341|Homo sapiens HP8 peptide protein.
Length = 341
Score = 30.3 bits (65), Expect = 4.7
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -2
Query: 184 RKGADASTAYTRARRKQRHARTHTDRGRSPAGEGGGAA 71
R A A+T TRAR + R RT R P G G AA
Sbjct: 86 RAAAAAATLTTRARPRARRRRTARGSARPPPGYGCAAA 123
>BC111856-1|AAI11857.1| 144|Homo sapiens Unknown (protein for
IMAGE:5174787) protein.
Length = 144
Score = 30.3 bits (65), Expect = 4.7
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 71 GGAPALPGRASPPICMCACVPLFASRPSV 157
GG ALPG SPP+C+ P A PS+
Sbjct: 41 GGLTALPGTLSPPLCLVGSDP--APSPSI 67
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,473,559
Number of Sequences: 237096
Number of extensions: 1439891
Number of successful extensions: 12193
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12191
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5477474182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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