Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_G17
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64848-8|ABS83847.1|  408|Caenorhabditis elegans Hypothetical pr...    31   0.55 
Z93377-6|CAB07572.2|  254|Caenorhabditis elegans Hypothetical pr...    31   0.73 
U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (gr...    29   2.2  
AF099003-3|ABA00149.1|  759|Caenorhabditis elegans Hypothetical ...    29   2.9  
AF068718-5|AAC17768.1|  320|Caenorhabditis elegans Hypothetical ...    27   6.8  
AF039038-1|AAK21435.1|  877|Caenorhabditis elegans Hypothetical ...    27   9.0  

>U64848-8|ABS83847.1|  408|Caenorhabditis elegans Hypothetical
           protein C50E3.16 protein.
          Length = 408

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 274 SFFCI-FLNFFMSSRTFINISYLKKIYIKMYRKGADASTAYTRA 146
           S +C+  L  F    T   I+Y   IY+K+ ++   ++TAYTRA
Sbjct: 70  SVWCMQLLELFYGWATATEIAYFAYIYVKVPKEDYKSATAYTRA 113


>Z93377-6|CAB07572.2|  254|Caenorhabditis elegans Hypothetical
           protein F13A7.10 protein.
          Length = 254

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 78  PPPSPAGLRPRSVCVRACLCLRRALVYAVLASAPFRYI 191
           PPPSP+    R   +R C   +RAL+YA +   P   I
Sbjct: 18  PPPSPSPNTFRIYSMRFCPAAQRALIYASVKKIPSEVI 55


>U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (grd
           related) protein22 protein.
          Length = 162

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +2

Query: 71  GGAPALPGRASPPICMCACVP 133
           G APA P  A PP  MC C P
Sbjct: 31  GCAPAAPACAPPPPPMCGCAP 51


>AF099003-3|ABA00149.1|  759|Caenorhabditis elegans Hypothetical
           protein Y59C2A.3 protein.
          Length = 759

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = -2

Query: 193 KMYRKGADASTAYTRARRKQRHARTHTDRGRSPAGEGGGAARLKYTQI*IMSRHESYPIT 14
           K  R   +  TA    R+++RH++  +++ +    +   AAR +Y Q   MS  E +   
Sbjct: 74  KWQRMSEEQRTALNEQRKRRRHSKCDSEQMKEANAKKAEAARARYHQ---MSEEEKFAYN 130

Query: 13  LR 8
            R
Sbjct: 131 RR 132


>AF068718-5|AAC17768.1|  320|Caenorhabditis elegans Hypothetical
           protein R01B10.4 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 329 LITCFFNINVTE*KRIN*LYIRYCTRLCINLYPC 430
           LITCF  +  +   R   ++ + CT++CI+ Y C
Sbjct: 11  LITCFVQLEASPGDRS--IWYQECTQVCISKYNC 42


>AF039038-1|AAK21435.1|  877|Caenorhabditis elegans Hypothetical
           protein K06A5.4 protein.
          Length = 877

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 193 KMYRKGADASTAYTRARRKQRHARTHTDRGRSPAG 89
           K YR G DAS++  R+ R +   R H D  R P G
Sbjct: 438 KRYR-GRDASSSSGRSVRFEEEHRRHGDEYRDPRG 471


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,578,661
Number of Sequences: 27780
Number of extensions: 228178
Number of successful extensions: 684
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)