Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_G17
         (551 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    25   0.67 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   3.6  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              21   6.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.3  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   8.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.3  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   8.3  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -2

Query: 208 KKIYIKMYRKGADASTAYTRARRKQRHARTHTDR 107
           K IY + + K         + R ++R  R H+DR
Sbjct: 52  KSIYHRQHSKNEQQRKEMEQMREREREQREHSDR 85


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +3

Query: 81  PPSPAGLRPRSVCVRACLCLRRALV 155
           PP   G +  ++   AC C R  L+
Sbjct: 469 PPETPGPQVETILQNACFCARNELM 493


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 195 LKCIGKVRTL 166
           LKCIGK +TL
Sbjct: 120 LKCIGKYKTL 129


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 332 SVNGGRAPRPDATLNHH 282
           SVNG ++  P   L+HH
Sbjct: 801 SVNGDQSQPPHQQLHHH 817


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +2

Query: 443 IIILYFYCW 469
           ++IL+F CW
Sbjct: 275 VVILFFICW 283


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 142 RKQRHARTHTDRGRSPAG 89
           R++ HA+ ++   RSPAG
Sbjct: 71  RQEVHAQVYSCLARSPAG 88


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 187 YRKGADASTAYTRARRKQRHARTH 116
           YRK  + S   +R RR++  +R H
Sbjct: 289 YRKYRETSKERSRDRRERGRSREH 312


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,739
Number of Sequences: 438
Number of extensions: 3259
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)