Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_G16
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    31   0.10 
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    27   2.2  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.9  
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      27   2.9  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    25   6.7  
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces...    25   8.9  

>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
 Frame = +3

Query: 24  TRKSFATHI-----LYFLTELSPLSMT--SFYVKKHAKSDTIKRDTRXXXXXXXXXXXWK 182
           T+ SF+THI     L+   E+SP+  T   ++  K +   T+K D              K
Sbjct: 744 TKDSFSTHISVSSLLHSDNEISPIDSTRKDYFTSKDSNLQTLKEDASST----------K 793

Query: 183 VIQDSGLVDIDNLEEANNVNEKFGNIEQ 266
             +DSG  D D L   N+V++     EQ
Sbjct: 794 QAKDSGTNDFDKLISGNDVSKNNSGEEQ 821


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 42  THILYFLTELSPLSMTSFYVKKHAKSDTI 128
           + ILYFL  LSP+S +S  V  H   ++I
Sbjct: 94  SQILYFLYLLSPISQSSRDVSSHLLDESI 122


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -1

Query: 374 YVIVFRPFPASSTFFISNEFLF--VYRINLIFVYIVNLLFN 258
           Y + FRP   SS   I    L+   YR N I++ ++  + N
Sbjct: 154 YTLYFRPMVVSSFAHIFGHLLYCMAYRANWIYLILIGRMLN 194


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +3

Query: 366 DDIFSKMDEDEMRML-SDEPNSSRDF 440
           +D+FS   EDE R L +DE    RDF
Sbjct: 64  EDMFSDTSEDEKRTLPNDEAQKRRDF 89


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 366 DDIFSKMDEDEMRMLSDEPNSSRDFSIGFGYYPGCVGDNREPANRSSG 509
           D+ +S  D  +  M SDE NSS+      G +P    +NRE +   SG
Sbjct: 615 DEGYSSDDSVDNEMYSDEENSSK------GAFPDEENENRELSEDYSG 656


>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 560 LTPIRFRASRVRSKYIST 507
           L P+R  AS+V SKY++T
Sbjct: 60  LQPVRCSASKVTSKYLTT 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,360,693
Number of Sequences: 5004
Number of extensions: 45063
Number of successful extensions: 122
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)