Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_G16
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0014 + 18392622-18392834,18393064-18393147,18393709-183937... 35 0.046
03_02_0124 - 5749183-5749773,5750628-5751160,5751191-5753035,575... 31 0.74
07_01_0251 + 1874148-1874311,1874367-1874429,1874484-1874709,187... 30 1.7
06_01_1138 - 9429447-9433868 29 4.0
05_06_0228 + 26570066-26571352 28 6.9
03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775 28 6.9
11_06_0559 + 24972403-24972445,24972590-24972680,24973911-249740... 27 9.2
04_04_0468 - 25447774-25447945,25449016-25449130,25449541-254498... 27 9.2
02_05_0161 + 26384079-26384086,26386173-26386226,26386376-263864... 27 9.2
01_01_0565 - 4159946-4160042,4160140-4160243,4160378-4160533,416... 27 9.2
>11_05_0014 +
18392622-18392834,18393064-18393147,18393709-18393797,
18393889-18394063,18394370-18394489,18394591-18394677,
18394755-18394826,18395166-18395279,18395387-18395487,
18395576-18395669,18395794-18395961,18396287-18396352,
18396475-18396531,18396708-18396927,18397015-18397151,
18397573-18397641,18397722-18397781,18397927-18397998,
18398171-18398218,18398376-18398495,18398743-18398808,
18399341-18399453,18399821-18399905,18400246-18400356,
18400436-18400531,18401075-18401143,18401235-18401453
Length = 974
Score = 35.1 bits (77), Expect = 0.046
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = +3
Query: 435 DFSIGFGYYPGCVGDNREPANRSSGAYIFRPNSTSP 542
+F + YY G G+ +P ++SGAYIFRPN T P
Sbjct: 603 NFEQKYKYYIGQDGNGSDP--QASGAYIFRPNGTVP 636
>03_02_0124 -
5749183-5749773,5750628-5751160,5751191-5753035,
5753632-5753820,5753911-5754013,5754087-5754269,
5754392-5754484,5755031-5755219,5756133-5756327
Length = 1306
Score = 31.1 bits (67), Expect = 0.74
Identities = 15/67 (22%), Positives = 31/67 (46%)
Frame = +3
Query: 414 DEPNSSRDFSIGFGYYPGCVGDNREPANRSSGAYIFRPNSTSPEPYRSQATVKRIEHGHI 593
D+ N+ ++ +GF Y G + + + + + PNS S P+ Q + ++G +
Sbjct: 714 DDGNNWHEYGVGFPRYFNHQGRDPQMRHFNGKEHSSSPNSVSGAPFERQGEIAVEDNGAV 773
Query: 594 RRTVTNV 614
TN+
Sbjct: 774 EENYTNM 780
>07_01_0251 +
1874148-1874311,1874367-1874429,1874484-1874709,
1874830-1875081,1875158-1875267,1875720-1875815,
1875898-1875985,1876246-1876475,1876745-1876929,
1877136-1877335,1877592-1877924,1878058-1878159,
1878869-1879166,1879626-1879774,1879859-1880143,
1880531-1880728
Length = 992
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -1
Query: 383 FRKYVIVFRPFPASSTFFISNEFLFVYRINLIFVYIVNLLFNI 255
F +V+VF FP +F I E + R+N F + N++F I
Sbjct: 671 FVYFVLVFSMFPQCDSFRILREDSWADRVNSFFTAMWNVVFEI 713
>06_01_1138 - 9429447-9433868
Length = 1473
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +3
Query: 516 IFRPNSTSPEPYRSQATVKRIEHGHIRRTVTN 611
+F P ST P P QA + HIR V N
Sbjct: 428 MFPPASTKPPPQSEQAAASTLGEDHIREIVHN 459
>05_06_0228 + 26570066-26571352
Length = 428
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +3
Query: 309 KEKFVT-DXXXXXXXXXXKYDDIFSKMDEDEM--RMLSDEPNSSRDFSIGFGYYPG 467
KEKF T + ++ +S++D DE+ RML SR + G G YPG
Sbjct: 308 KEKFNTVEEDEPSQNRSAHFEYYWSELDLDELDGRMLFVGRGCSRSYEAGDGRYPG 363
>03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775
Length = 1441
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = -1
Query: 611 IGDCTSNMAMFNSFYCS--LTPIRF 543
+ DC ++AMF+ YCS + PIR+
Sbjct: 1034 LSDCACDIAMFSDSYCSKQMLPIRY 1058
>11_06_0559 +
24972403-24972445,24972590-24972680,24973911-24974030,
24974121-24974237,24974745-24974840,24975317-24975610,
24977153-24977258,24977365-24977566,24977671-24977792
Length = 396
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/54 (24%), Positives = 24/54 (44%)
Frame = +3
Query: 456 YYPGCVGDNREPANRSSGAYIFRPNSTSPEPYRSQATVKRIEHGHIRRTVTNVG 617
+ PGC +R P R S Y RP + + Q+ K ++ ++ + +G
Sbjct: 45 WIPGCASADRRPRVRQSVLYSDRPKRSQGIRGQVQSKTKSLDEKNVSEVSSELG 98
>04_04_0468 -
25447774-25447945,25449016-25449130,25449541-25449877,
25450299-25450628,25451090-25451362,25451471-25451929,
25452307-25452516,25452617-25452828,25453304-25453404,
25453584-25454008,25454167-25454360,25454436-25454701,
25454809-25455015,25455121-25455281,25455741-25455933,
25456158-25456251,25457238-25457373,25458074-25458202,
25458315-25458449,25458549-25458613,25459875-25459950,
25460775-25460885,25461194-25461371,25462340-25462434
Length = 1557
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 237 HYSLLPNYLCLLNQNLESLSNIHWYY 160
H L+P L L+SLSN+H+YY
Sbjct: 624 HEMLIPAVLKPSGLKLDSLSNLHFYY 649
>02_05_0161 +
26384079-26384086,26386173-26386226,26386376-26386448,
26386775-26386822,26386906-26386953,26387990-26388061,
26388156-26388311,26388428-26388531,26388628-26388724
Length = 219
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +3
Query: 243 EKFGNIEQKVNDINKYQVNTINK 311
E F N++Q +N+I++Y + +NK
Sbjct: 110 ESFNNVKQWLNEIDRYASDNVNK 132
>01_01_0565 -
4159946-4160042,4160140-4160243,4160378-4160533,
4160629-4160700,4161796-4161843,4161923-4161970,
4162295-4162367,4163188-4163201
Length = 203
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +3
Query: 243 EKFGNIEQKVNDINKYQVNTINK 311
E F N++Q +N+I++Y + +NK
Sbjct: 94 ESFNNVKQWLNEIDRYASDNVNK 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,848,288
Number of Sequences: 37544
Number of extensions: 245127
Number of successful extensions: 542
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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