Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_G16
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077542-8|AAC26300.2|  342|Caenorhabditis elegans Serpentine re...    29   2.7  
AC025726-9|AAK73924.1|  594|Caenorhabditis elegans Hypothetical ...    29   2.7  
AC025726-8|AAT81183.1|  537|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF067943-3|AAC17664.1|  266|Caenorhabditis elegans Hypothetical ...    28   6.2  
U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>AF077542-8|AAC26300.2|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein64 protein.
          Length = 342

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = -2

Query: 316 FSLFIVLT*YLF-ISLTFCSILPNFSLTLFA 227
           F+LF+V+  Y+F IS    ++LPN S T+++
Sbjct: 77  FTLFVVVAKYIFFISFQVFAVLPNMSETIYS 107


>AC025726-9|AAK73924.1|  594|Caenorhabditis elegans Hypothetical
           protein Y71G12B.23a protein.
          Length = 594

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 363 YDDIFSKMDEDEMRMLSDEPNSS 431
           YDD F + DED++  LS +P  S
Sbjct: 153 YDDDFEQEDEDDLEWLSSQPGGS 175


>AC025726-8|AAT81183.1|  537|Caenorhabditis elegans Hypothetical
           protein Y71G12B.23b protein.
          Length = 537

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 363 YDDIFSKMDEDEMRMLSDEPNSS 431
           YDD F + DED++  LS +P  S
Sbjct: 153 YDDDFEQEDEDDLEWLSSQPGGS 175


>AF067943-3|AAC17664.1|  266|Caenorhabditis elegans Hypothetical
           protein F59B1.4 protein.
          Length = 266

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 12/126 (9%)
 Frame = -1

Query: 614 HIGDCTSNMAMFNSFYCSLTPIRFRASRVRSKYISTRTTIGRFSVITN-----ASRVIAK 450
           H+ D T  + + N F C  TP+ F A  +  K+    T + +++++ +      S +   
Sbjct: 10  HLTDRTLQLYLTNIFNCLATPVNFLAFYLIIKHSRRETKLFKYTLLISHLFFYVSNIFYG 69

Query: 449 T------NREISA*IWLIREHSHFVFIHFRKYVIVFRPFPASSTFF-ISNEFLFVYRINL 291
           T      N   SA IW+    + FV+  F   V+  +        F  SN   +++ + +
Sbjct: 70  TIANNLLNAFWSAAIWIFL-FAGFVYFTFMILVVRLKIVARKGKIFDFSNRSYYIFCV-I 127

Query: 290 IFVYIV 273
           + +YI+
Sbjct: 128 LALYII 133


>U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical
           protein F55D10.1 protein.
          Length = 955

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 450 FGYYPGCVGDNREPANRSSGAYIFRPNSTSP 542
           F YY G    + +P    SGAYIFRP +  P
Sbjct: 608 FFYYEGIDSKDDQP----SGAYIFRPKTQQP 634


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,656,703
Number of Sequences: 27780
Number of extensions: 244698
Number of successful extensions: 702
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)