Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_G15
(593 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz... 230 1e-61
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha... 229 2e-61
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos... 217 1e-57
SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit L13... 30 0.29
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 29 0.68
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 27 1.6
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc... 27 2.1
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 27 2.1
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 26 3.6
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 26 4.8
SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr 1... 25 6.3
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 25 6.3
>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 230 bits (563), Expect = 1e-61
Identities = 109/184 (59%), Positives = 132/184 (71%)
Frame = +3
Query: 15 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNV 194
K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK++++LRK C
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 195 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 374
NP+RG FHFRAPS+I K VRGM+PHKT RG+ AL L+ +G PPPFD
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125
Query: 375 XXFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLEDKRKVKAIKLISYERKLKKITKEAGEK 554
LKPGRKYC VGRLS EVGWKY D+V KLE++RKVK+ Y+ KL K K A K
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSAAF--YQAKLAKQKKIASAK 183
Query: 555 VAKA 566
A +
Sbjct: 184 AASS 187
>SPBC839.13c |rpl1601||60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 229 bits (561), Expect = 2e-61
Identities = 109/182 (59%), Positives = 131/182 (71%)
Frame = +3
Query: 15 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNV 194
K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK++++LRK C
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 195 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 374
NP+RG FHFRAPS+I K VRGM+PHKT RG+ AL L+ +G PPPFD
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125
Query: 375 XXFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLEDKRKVKAIKLISYERKLKKITKEAGEK 554
LKPGRKYC VGRLS EVGWKY D+V KLE++RKVK+ Y+ KL K K A K
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSAAF--YQAKLAKQKKIASAK 183
Query: 555 VA 560
A
Sbjct: 184 EA 185
>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 217 bits (529), Expect = 1e-57
Identities = 94/160 (58%), Positives = 121/160 (75%)
Frame = +3
Query: 15 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNV 194
K ++ID +GHL+GRLA+ +AK LL G KVVVVRCE++NISG+FFRNKLK++++LRK C
Sbjct: 6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 195 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 374
NP+RG FHFRAPS+I K VRGM+PHKT RG AL+ L+ +G PPPFD
Sbjct: 66 NPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAAL 125
Query: 375 XXFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLEDKRKVKA 494
LKP RKYC +GRLS EVGWKY+++V KLE++RK+K+
Sbjct: 126 RVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKS 165
>SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit
L13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 29.9 bits (64), Expect = 0.29
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +3
Query: 90 GNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNVN--PARGPFHFRAPSKILWKTVRGM 263
G+ VVV C +I ISG N K+ S + ++ R +L + V GM
Sbjct: 52 GDVVVVTDCSEIGISGRKLENH-KYYSHSGQPGHLKEWTMEEMAAKRGHKDLLRRAVGGM 110
Query: 264 IPHKTERGKNALRRLRTYDGCPPPF 338
+P + + ++RL YDG P+
Sbjct: 111 LP-RNKLWDRRMKRLYIYDGAEHPY 134
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 28.7 bits (61), Expect = 0.68
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 42 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFF 146
H L + AV K++ G K VV+RC+ I + +FF
Sbjct: 157 HHLEDVKAVGKKLIKAGCKNVVIRCDDIPFASDFF 191
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 27.5 bits (58), Expect = 1.6
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = +3
Query: 420 RLSHEVGWKYRDVVRKLEDKRKVKAIKLISYERKLKKITKEAGEK 554
R S E K D K E+KR+ K K E+K KK KE +K
Sbjct: 428 RKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKKK 472
>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 381
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 184 LLRRNDINFNLFLKKLPEMLICSQRT 107
+L NDIN N L KLP ++ ++RT
Sbjct: 37 VLANNDINENTVLLKLPPNILINKRT 62
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 479 EESEGHQADIL*EETQENHQGSRREGGESDG 571
EE E +AD + EE E +G E E DG
Sbjct: 176 EEEEEEEADEMEEEFDEEGEGDEEEEEEDDG 206
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 155 FVPEEIAGNVNLFTTNDHNFVSFQQDLSNYCGQSTEQV 42
F +I GNV LF+T+ H QQ L+ + E V
Sbjct: 392 FELSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAV 429
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Frame = -2
Query: 448 YFHPTS-CERRPT*QYLRPGFRQNTRSAA--GTTTRRLLSNGGGQP 320
YF P C R P Y PGF + + AA G T S G+P
Sbjct: 219 YFTPGKHCPRLPVRVYTTPGFSEQGKFAAELGAKTLDFFSGVFGEP 264
>SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 415
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -1
Query: 140 IAGNVNLFTTNDHNFVSFQQDLSNYCGQSTEQVPAP 33
+A NV+ F++ + V+ ++ Y G++ +QVP P
Sbjct: 1 MASNVDKFSSRFYLNVNKEELKKEYVGKTIQQVPTP 36
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 474 DKRKVKAIKLISYERKLKKITKEAGE 551
DKR+ I L++YE++L+ + K E
Sbjct: 18 DKRETIYIDLLNYEKQLRNLNKNTRE 43
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,838
Number of Sequences: 5004
Number of extensions: 54445
Number of successful extensions: 183
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -