Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_G15
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906...   209   1e-54
07_01_0071 - 522920-523063,524125-524212,524289-524677                206   8e-54
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769...   113   8e-26
11_04_0056 + 12942802-12942920,12943022-12943115                       61   6e-10
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572...    38   0.008
07_01_0444 + 3357048-3357425,3357841-3357969,3358165-3358284,335...    31   0.69 
05_03_0238 - 10783451-10783735,10784686-10785762                       29   2.1  
05_05_0082 + 22252993-22255617                                         29   2.8  
04_01_0112 + 1151242-1151272,1151722-1151928,1151996-1152318,115...    29   3.7  
11_06_0432 + 23448482-23448570,23448987-23449100,23449514-234495...    28   4.9  
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821...    28   4.9  
02_02_0350 + 9239138-9240218,9240755-9240906,9241392-9241457,924...    28   6.5  

>03_06_0010 +
           30990002-30990273,30990372-30990488,30990581-30990668,
           30991505-30991648
          Length = 206

 Score =  209 bits (510), Expect = 1e-54
 Identities = 96/181 (53%), Positives = 127/181 (70%)
 Frame = +3

Query: 21  IVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNVNP 200
           +V+D R H+LGRLA++IAK LL G +VVVVRCE+I +SG   R K+K++ FLRKR N  P
Sbjct: 12  VVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKP 71

Query: 201 ARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXX 380
           + GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+G PPP+D             
Sbjct: 72  SHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEGVPPPYDRTKRMVIPDALKV 131

Query: 381 FCLKPGRKYCHVGRLSHEVGWKYRDVVRKLEDKRKVKAIKLISYERKLKKITKEAGEKVA 560
             L+PG KYC +G+LS EVGW Y D +R+LE+KRK KA       ++L K+  +A EK A
Sbjct: 132 LRLQPGHKYCLLGQLSKEVGWNYYDTIRELEEKRKEKAKVAYDRRKQLAKLRVKA-EKAA 190

Query: 561 K 563
           +
Sbjct: 191 E 191


>07_01_0071 - 522920-523063,524125-524212,524289-524677
          Length = 206

 Score =  206 bits (504), Expect = 8e-54
 Identities = 93/175 (53%), Positives = 125/175 (71%)
 Frame = +3

Query: 15  KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNV 194
           + +V+D R H+LGRLA+++AK LL G +VVVVRCE++ ISG   R K+K++ FLRKR N 
Sbjct: 10  RRVVVDARHHMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLRKRMNT 69

Query: 195 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 374
            P+ GP HFRAPS+I W+TVRGMIPHKT RG+ AL  L+ +DG PPP+D           
Sbjct: 70  KPSHGPIHFRAPSRIFWRTVRGMIPHKTPRGEAALANLKAFDGVPPPYDRTKRMVVPDAL 129

Query: 375 XXFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLEDKRKVKAIKLISYERKLKKITK 539
               L+PG KYC +G+LS EVGW Y D +R+LE+KRK KA   ++YER+ K++T+
Sbjct: 130 KVLRLQPGHKYCLLGQLSKEVGWNYHDTIRELEEKRKEKA--KVAYERR-KQLTR 181


>03_06_0007 -
           30975910-30975921,30976660-30976747,30976850-30976966,
           30977081-30977154
          Length = 96

 Score =  113 bits (273), Expect = 8e-26
 Identities = 48/92 (52%), Positives = 61/92 (66%)
 Frame = +3

Query: 189 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXX 368
           N  P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+   PP+D         
Sbjct: 2   NTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPD 61

Query: 369 XXXXFCLKPGRKYCHVGRLSHEVGWKYRDVVR 464
                 L+PG KYC +G+LS EVGW Y D +R
Sbjct: 62  ALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIR 93


>11_04_0056 + 12942802-12942920,12943022-12943115
          Length = 70

 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 26/56 (46%), Positives = 33/56 (58%)
 Frame = +3

Query: 282 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRKYCHVGRLSHEVGWKY 449
           RG+ AL RL+ Y+G PPP+D               L+PG KYC +G+LS EVGW Y
Sbjct: 9   RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNY 64


>01_06_0707 +
           31355929-31356244,31356766-31356992,31357081-31357257,
           31357355-31357510,31357778-31358054,31358192-31358306,
           31360349-31360634,31361196-31361381,31361663-31361833,
           31362307-31362426
          Length = 676

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 12/118 (10%)
 Frame = +3

Query: 24  VIDGRGHLLGRLAAVIAKVLLEGNK------------VVVVRCEQINISGNFFRNKLKFM 167
           V+D    +LGRLA+ IA  +   N+            VVVV  E++ +SG     KL   
Sbjct: 541 VVDATDKILGRLASTIAVHIRGKNEATYTPSVDMGAFVVVVNAEKVAVSGKKRSQKLYRR 600

Query: 168 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFD 341
              R              R P +I+   VRGM+P K   G+     L+ Y G   P +
Sbjct: 601 HSGRPGGMKEETFDQLQKRIPERIIEHAVRGMLP-KGRLGRRLFTHLKVYKGAEHPHE 657


>07_01_0444 +
           3357048-3357425,3357841-3357969,3358165-3358284,
           3358661-3358753,3358935-3359014,3359180-3359293,
           3359530-3359603,3359757-3359833,3360558-3360641,
           3360732-3360824,3360901-3361008,3361130-3361204,
           3361507-3361911
          Length = 609

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 19/45 (42%), Positives = 29/45 (64%)
 Frame = +3

Query: 432 EVGWKYRDVVRKLEDKRKVKAIKLISYERKLKKITKEAGEKVAKA 566
           +VG + R   RK E+K+KVKA K  + + K+ K  K+  +K+AKA
Sbjct: 562 KVGPEERKAARK-ENKKKVKAEKREARKDKIPKAEKKKRKKMAKA 605


>05_03_0238 - 10783451-10783735,10784686-10785762
          Length = 453

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 420 RLSHEVGWKYRDVVRKLEDKRKVKAIKLISYERKLKKITKEAGE 551
           +L +E+    RD+ ++ EDK     IK+ + E K  K+ K   E
Sbjct: 177 KLGNEIDKTRRDITKQFEDKGNKLEIKMKALEGKTDKLDKSLAE 220


>05_05_0082 + 22252993-22255617
          Length = 874

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/17 (76%), Positives = 13/17 (76%)
 Frame = +3

Query: 441 WKYRDVVRKLEDKRKVK 491
           WK RD VRKL D RKVK
Sbjct: 721 WKERDEVRKLMDYRKVK 737


>04_01_0112 +
           1151242-1151272,1151722-1151928,1151996-1152318,
           1152552-1153793
          Length = 600

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +1

Query: 106 SFVVNRLTFPAISSGTN*SLCHSFVKDVMSTQPVDLFTSELHQKSSGRPSEE*SHIRLSV 285
           + V+NR T   +  G N  L  S++ ++ S + VDL  + LH  +      +  ++ L V
Sbjct: 35  ALVINRTTLSELYLGGNQLLTTSWISNLTSLRVVDLSQNFLHGYNGICNLHQLEYLHLGV 94

Query: 286 GRMH 297
             +H
Sbjct: 95  NMLH 98


>11_06_0432 +
           23448482-23448570,23448987-23449100,23449514-23449580,
           23449614-23449741,23452786-23453071,23453264-23453414,
           23453603-23453799
          Length = 343

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -1

Query: 167 HKLQFVPEEIAGNVNLFTTNDHNFVSFQQDLSNYCGQSTEQVPAPVDYYGLITK 6
           H++  V  E+  +V  F   DH+  +    L N+C +      + VD  G +TK
Sbjct: 69  HEIAGVVTEVGADVKGFKVGDHDCENCNSSLENHCSKCVVTYNS-VDSDGTVTK 121


>05_04_0347 +
           20479682-20479753,20480136-20480813,20481143-20482195,
           20482345-20482406,20482491-20482541,20482635-20482719,
           20483253-20483342,20483472-20483563,20483704-20483728
          Length = 735

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +3

Query: 189 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 335
           NV   R P  FR P+K + +T R  I           R ++T    PPP
Sbjct: 652 NVRANRVPESFRKPNKGIQETARSQISSSKSATPAQTRSIKTRAPNPPP 700


>02_02_0350 +
           9239138-9240218,9240755-9240906,9241392-9241457,
           9242715-9242951
          Length = 511

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -2

Query: 163 NFNLFLKKLPEM-LICSQRTTTTLFPSSRTLAITAASRPSKCPRPSITMALLLNV 2
           NF++ L    +  +IC+Q   T  FP+  +L I   S+ S  P P  TM   + V
Sbjct: 212 NFSVLLLPFSKCSVICTQDINTVWFPNLCSLEIRNCSKLSLPPMPHNTMLTRVTV 266


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,106,008
Number of Sequences: 37544
Number of extensions: 383580
Number of successful extensions: 1081
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)