Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_G12
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    75   1e-14
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    68   9e-13
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    50   3e-07
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    29   0.68 
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz...    27   2.1  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    27   2.1  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    26   4.8  
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    26   4.8  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 74.5 bits (175), Expect = 1e-14
 Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
 Frame = +3

Query: 285 RSHAGFFTIDETYGSNLYFWYFPPFSKNKDAPVILWLQGGPGASSLFGLFIEIGPLVAGK 464
           + + G+  +++    +L+FW+F   +  ++ PV+LWL GGPG SSL GLF+E+GP     
Sbjct: 587 KQYTGYLDVEDD--RHLFFWFFESRNDPENDPVVLWLNGGPGCSSLTGLFMELGPSSINI 644

Query: 465 DGFSK--RKYHWALDAHLIFIDNPVGTGFS 548
           +        + W  +A +IF+D P+ TGFS
Sbjct: 645 ETLKPEYNPHSWNSNASVIFLDQPINTGFS 674


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 68.1 bits (159), Expect = 9e-13
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
 Frame = +3

Query: 285 RSHAGFFTIDETYGSNLYFWYFPPFSKNKDAPVILWLQGGPGASSLFGLFIEIGPL-VAG 461
           R HAG     +    +L+FW F       +   ILWL GGPG SS  G  +E+GP  +  
Sbjct: 44  RMHAGHLNQTDQLDGDLFFWMFESVKPEYEHRSILWLNGGPGCSSEDGSLMEVGPFRLDD 103

Query: 462 KDGFSKRKYHWALDAHLIFIDNPVGTGFSFTRNDQRYCKSEK 587
            + F      W    +L+F+D P+GTG+S++        +EK
Sbjct: 104 NNTFQLNPGRWDELGNLLFVDQPLGTGYSYSLAKDFQSNNEK 145


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 49.6 bits (113), Expect = 3e-07
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
 Frame = +3

Query: 330 NLYFWYFPPFSKNKDAPVILWLQGGPGASSLFGLFIEIGPLVAGKDGFSK--RKYHWALD 503
           +L++ Y P    ++    I+WLQGGPG +   G F E GP+   +   S       W   
Sbjct: 86  SLFYTYAPAVVDSET--FIVWLQGGPGCAGTLGFFSENGPIEISQSSPSPSLNPESWTNF 143

Query: 504 AHLIFIDNPVGTGFS 548
           A+++++D P GTG+S
Sbjct: 144 ANMLWLDQPFGTGYS 158


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +3

Query: 45  YTYKMIVVHFNKLLIISVVFSTLSLHGNSFIFANIYPRLKLDTNSLYIG-EPLILTPYLE 221
           ++ + I+V    +  +     T+S+ GN   F +IYP+L +    L +G E     PY E
Sbjct: 357 HSQQTILVPSGWIYAVVTPCDTISIAGNFLTFLHIYPQLSIYNLELQLGIEKEYQYPYFE 416


>SPCC1259.09c |||pyruvate dehydrogenase protein x
           component|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 456

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 323 ISFVDCEKTSMASKTYVISKW 261
           I FVDC K++  +  +V+S+W
Sbjct: 436 IKFVDCLKSNFENPEFVLSRW 456


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 357 FSKNKDAPVILWLQGGPGASSLFGLF 434
           F  NK  PV+ +  GGPG+  +  LF
Sbjct: 549 FDVNKKYPVLFFAYGGPGSQQVAKLF 574


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 444 GPLVAGKDGFSKRKYHWALDAHLIFIDNPVGTGFSFT 554
           G  V G+D F   KY+ A++  ++F   P G G S+T
Sbjct: 676 GHCVYGEDVFVGYKYYEAVEREVLF---PFGYGLSYT 709


>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 90  ISVVFSTLSLHGNSFIFANIYPRLKLDTNSLYIGEPLILTPYLEKGSISLAQ-NLSRVPL 266
           IS ++ST S H N+F  +N Y  +    +     E L+ T  L +    L+Q  +S+ P 
Sbjct: 280 ISNIYSTFSCHKNTFFTSNSYVWILTPEDFSNQIEALLNTENLNEAISVLSQITVSQFPK 339

Query: 267 TD 272
            D
Sbjct: 340 RD 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,552,371
Number of Sequences: 5004
Number of extensions: 56617
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)