Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_G09
(561 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L36188-1|AAA85339.1| 119|Homo sapiens small nuclear ribonucleop... 133 5e-31
J03798-1|AAA36620.1| 119|Homo sapiens protein ( Human autoantig... 133 5e-31
CR542239-1|CAG47035.1| 119|Homo sapiens SNRPD1 protein. 133 5e-31
BC072427-1|AAH72427.1| 119|Homo sapiens small nuclear ribonucle... 133 5e-31
BC001721-1|AAH01721.1| 119|Homo sapiens small nuclear ribonucle... 133 5e-31
AJ577268-1|CAE11897.1| 119|Homo sapiens small nuclear ribonucle... 130 2e-30
BC007623-1|AAH07623.1| 123|Homo sapiens LSM10, U7 small nuclear... 47 5e-05
AF394685-1|AAL07689.1| 123|Homo sapiens U7 snRNA-associated Sm-... 47 5e-05
U15009-1|AAA57034.1| 126|Homo sapiens Sm D3 protein. 38 0.032
CR456583-1|CAG30469.1| 126|Homo sapiens SNRPD3 protein. 38 0.032
BC003150-1|AAH03150.1| 126|Homo sapiens small nuclear ribonucle... 38 0.032
BC000457-1|AAH00457.1| 126|Homo sapiens small nuclear ribonucle... 38 0.032
CR542157-1|CAG46954.1| 95|Homo sapiens LSM2 protein. 36 0.13
CR542146-1|CAG46943.1| 95|Homo sapiens LSM2 protein. 36 0.13
BC009192-1|AAH09192.1| 95|Homo sapiens LSM2 homolog, U6 small ... 36 0.13
BA000025-11|BAB63302.1| 95|Homo sapiens small nuclear ribonucl... 36 0.13
AL929592-3|CAI18462.1| 95|Homo sapiens LSM2 homolog, U6 small ... 36 0.13
AL671762-3|CAI18212.1| 95|Homo sapiens LSM2 homolog, U6 small ... 36 0.13
AL662834-14|CAI17733.1| 95|Homo sapiens LSM2 homolog, U6 small... 36 0.13
AJ245416-1|CAB52190.1| 95|Homo sapiens G7b protein protein. 36 0.13
AF196468-1|AAG33023.1| 95|Homo sapiens SMX5-like protein protein. 36 0.13
AF182288-1|AAD56226.1| 95|Homo sapiens U6 snRNA-associated Sm-... 36 0.13
AF136977-1|AAG49438.1| 95|Homo sapiens snRNP core SM-like prot... 36 0.13
AF134726-9|AAD21818.1| 95|Homo sapiens snRNP protein. 36 0.13
BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small ... 34 0.39
BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small ... 34 0.39
BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small ... 34 0.39
BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small ... 34 0.39
AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein. 34 0.39
AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen protein. 34 0.39
AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated Sm-... 34 0.39
AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein pr... 34 0.39
AK023807-1|BAB14687.1| 1424|Homo sapiens protein ( Homo sapiens ... 31 2.8
BC104904-1|AAI04905.1| 1944|Homo sapiens anaphase promoting comp... 30 6.4
BC104902-1|AAI04903.1| 1944|Homo sapiens anaphase promoting comp... 30 6.4
AJ278357-1|CAC19484.1| 1944|Homo sapiens Tsg24 protein protein. 30 6.4
BT006656-1|AAP35302.1| 343|Homo sapiens carbonic anhydrase XII ... 29 8.5
BC023981-1|AAH23981.1| 354|Homo sapiens carbonic anhydrase XII ... 29 8.5
BC011691-1|AAH11691.1| 343|Homo sapiens carbonic anhydrase XII ... 29 8.5
BC000278-1|AAH00278.1| 343|Homo sapiens carbonic anhydrase XII ... 29 8.5
AF051882-1|AAC39789.1| 354|Homo sapiens carbonic anhydrase XII ... 29 8.5
AF037335-1|AAC63952.1| 354|Homo sapiens carbonic anhydrase prec... 29 8.5
>L36188-1|AAA85339.1| 119|Homo sapiens small nuclear
ribonucleoprotein protein.
Length = 119
Score = 133 bits (321), Expect = 5e-31
Identities = 65/91 (71%), Positives = 73/91 (80%)
Frame = +3
Query: 63 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 242
MKLVRFLMKLSHETVTIELKNG+ VHGTITGVDV+MNTHLKAVK+TLKNRE +QLETLSI
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 243 RGNNIRYYXXXXXXXXXXXXIDDTPKGRGKR 335
RGNNIRY+ +D PK + K+
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKK 91
>J03798-1|AAA36620.1| 119|Homo sapiens protein ( Human autoantigen
small nuclear ribonucleoprotein Sm-D mRNA, complete cds.
).
Length = 119
Score = 133 bits (321), Expect = 5e-31
Identities = 65/91 (71%), Positives = 73/91 (80%)
Frame = +3
Query: 63 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 242
MKLVRFLMKLSHETVTIELKNG+ VHGTITGVDV+MNTHLKAVK+TLKNRE +QLETLSI
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 243 RGNNIRYYXXXXXXXXXXXXIDDTPKGRGKR 335
RGNNIRY+ +D PK + K+
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKK 91
>CR542239-1|CAG47035.1| 119|Homo sapiens SNRPD1 protein.
Length = 119
Score = 133 bits (321), Expect = 5e-31
Identities = 65/91 (71%), Positives = 73/91 (80%)
Frame = +3
Query: 63 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 242
MKLVRFLMKLSHETVTIELKNG+ VHGTITGVDV+MNTHLKAVK+TLKNRE +QLETLSI
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 243 RGNNIRYYXXXXXXXXXXXXIDDTPKGRGKR 335
RGNNIRY+ +D PK + K+
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKK 91
>BC072427-1|AAH72427.1| 119|Homo sapiens small nuclear
ribonucleoprotein D1 polypeptide 16kDa protein.
Length = 119
Score = 133 bits (321), Expect = 5e-31
Identities = 65/91 (71%), Positives = 73/91 (80%)
Frame = +3
Query: 63 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 242
MKLVRFLMKLSHETVTIELKNG+ VHGTITGVDV+MNTHLKAVK+TLKNRE +QLETLSI
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 243 RGNNIRYYXXXXXXXXXXXXIDDTPKGRGKR 335
RGNNIRY+ +D PK + K+
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKK 91
>BC001721-1|AAH01721.1| 119|Homo sapiens small nuclear
ribonucleoprotein D1 polypeptide 16kDa protein.
Length = 119
Score = 133 bits (321), Expect = 5e-31
Identities = 65/91 (71%), Positives = 73/91 (80%)
Frame = +3
Query: 63 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 242
MKLVRFLMKLSHETVTIELKNG+ VHGTITGVDV+MNTHLKAVK+TLKNRE +QLETLSI
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 243 RGNNIRYYXXXXXXXXXXXXIDDTPKGRGKR 335
RGNNIRY+ +D PK + K+
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKK 91
>AJ577268-1|CAE11897.1| 119|Homo sapiens small nuclear
ribonucleoprotein Sm D1 protein.
Length = 119
Score = 130 bits (315), Expect = 2e-30
Identities = 64/91 (70%), Positives = 72/91 (79%)
Frame = +3
Query: 63 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 242
MKLVRFLMKLSHETV IELKNG+ VHGTITGVDV+MNTHLKAVK+TLKNRE +QLETLSI
Sbjct: 1 MKLVRFLMKLSHETVIIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 243 RGNNIRYYXXXXXXXXXXXXIDDTPKGRGKR 335
RGNNIRY+ +D PK + K+
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKK 91
>BC007623-1|AAH07623.1| 123|Homo sapiens LSM10, U7 small nuclear
RNA associated protein.
Length = 123
Score = 46.8 bits (106), Expect = 5e-05
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = +3
Query: 69 LVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRG 248
L+ L L T++L++ SV HG I VD MN L V T + +++L+ L + G
Sbjct: 17 LIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDLFVTG 76
Query: 249 NNIRY 263
N+RY
Sbjct: 77 RNVRY 81
>AF394685-1|AAL07689.1| 123|Homo sapiens U7 snRNA-associated
Sm-like protein LSM10 protein.
Length = 123
Score = 46.8 bits (106), Expect = 5e-05
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = +3
Query: 69 LVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRG 248
L+ L L T++L++ SV HG I VD MN L V T + +++L+ L + G
Sbjct: 17 LIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDLFVTG 76
Query: 249 NNIRY 263
N+RY
Sbjct: 77 RNVRY 81
>U15009-1|AAA57034.1| 126|Homo sapiens Sm D3 protein.
Length = 126
Score = 37.5 bits (83), Expect = 0.032
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +3
Query: 72 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 251
++ L + VT E G V G + + MN + + VT ++ QLE + IRG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 252 NIRY 263
IR+
Sbjct: 67 KIRF 70
>CR456583-1|CAG30469.1| 126|Homo sapiens SNRPD3 protein.
Length = 126
Score = 37.5 bits (83), Expect = 0.032
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +3
Query: 72 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 251
++ L + VT E G V G + + MN + + VT ++ QLE + IRG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 252 NIRY 263
IR+
Sbjct: 67 KIRF 70
>BC003150-1|AAH03150.1| 126|Homo sapiens small nuclear
ribonucleoprotein D3 polypeptide 18kDa protein.
Length = 126
Score = 37.5 bits (83), Expect = 0.032
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +3
Query: 72 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 251
++ L + VT E G V G + + MN + + VT ++ QLE + IRG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 252 NIRY 263
IR+
Sbjct: 67 KIRF 70
>BC000457-1|AAH00457.1| 126|Homo sapiens small nuclear
ribonucleoprotein D3 polypeptide 18kDa protein.
Length = 126
Score = 37.5 bits (83), Expect = 0.032
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +3
Query: 72 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 251
++ L + VT E G V G + + MN + + VT ++ QLE + IRG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 252 NIRY 263
IR+
Sbjct: 67 KIRF 70
>CR542157-1|CAG46954.1| 95|Homo sapiens LSM2 protein.
Length = 95
Score = 35.5 bits (78), Expect = 0.13
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 63 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 236
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 237 SIRGNNIRY 263
IRG+ +RY
Sbjct: 61 FIRGSVVRY 69
>CR542146-1|CAG46943.1| 95|Homo sapiens LSM2 protein.
Length = 95
Score = 35.5 bits (78), Expect = 0.13
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 63 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 236
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 237 SIRGNNIRY 263
IRG+ +RY
Sbjct: 61 FIRGSVVRY 69
>BC009192-1|AAH09192.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 95
Score = 35.5 bits (78), Expect = 0.13
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 63 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 236
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 237 SIRGNNIRY 263
IRG+ +RY
Sbjct: 61 FIRGSVVRY 69
>BA000025-11|BAB63302.1| 95|Homo sapiens small nuclear ribonuclear
protein D homolog protein.
Length = 95
Score = 35.5 bits (78), Expect = 0.13
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 63 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 236
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 237 SIRGNNIRY 263
IRG+ +RY
Sbjct: 61 FIRGSVVRY 69
>AL929592-3|CAI18462.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.ta 2 protein.
Length = 95
Score = 35.5 bits (78), Expect = 0.13
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 63 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 236
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 237 SIRGNNIRY 263
IRG+ +RY
Sbjct: 61 FIRGSVVRY 69
>AL671762-3|CAI18212.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.ta 2 protein.
Length = 95
Score = 35.5 bits (78), Expect = 0.13
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 63 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 236
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 237 SIRGNNIRY 263
IRG+ +RY
Sbjct: 61 FIRGSVVRY 69
>AL662834-14|CAI17733.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.pha 3 (pseudogene) protein.
Length = 95
Score = 35.5 bits (78), Expect = 0.13
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 63 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 236
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 237 SIRGNNIRY 263
IRG+ +RY
Sbjct: 61 FIRGSVVRY 69
>AJ245416-1|CAB52190.1| 95|Homo sapiens G7b protein protein.
Length = 95
Score = 35.5 bits (78), Expect = 0.13
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 63 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 236
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 237 SIRGNNIRY 263
IRG+ +RY
Sbjct: 61 FIRGSVVRY 69
>AF196468-1|AAG33023.1| 95|Homo sapiens SMX5-like protein protein.
Length = 95
Score = 35.5 bits (78), Expect = 0.13
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 63 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 236
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 237 SIRGNNIRY 263
IRG+ +RY
Sbjct: 61 FIRGSVVRY 69
>AF182288-1|AAD56226.1| 95|Homo sapiens U6 snRNA-associated
Sm-like protein LSm2 protein.
Length = 95
Score = 35.5 bits (78), Expect = 0.13
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 63 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 236
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 237 SIRGNNIRY 263
IRG+ +RY
Sbjct: 61 FIRGSVVRY 69
>AF136977-1|AAG49438.1| 95|Homo sapiens snRNP core SM-like protein
SM-x5 protein.
Length = 95
Score = 35.5 bits (78), Expect = 0.13
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 63 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 236
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 237 SIRGNNIRY 263
IRG+ +RY
Sbjct: 61 FIRGSVVRY 69
>AF134726-9|AAD21818.1| 95|Homo sapiens snRNP protein.
Length = 95
Score = 35.5 bits (78), Expect = 0.13
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +3
Query: 63 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 236
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 237 SIRGNNIRY 263
IRG+ +RY
Sbjct: 61 FIRGSVVRY 69
>BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 33.9 bits (74), Expect = 0.39
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 81 LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNI 257
L + + +ELKNG +G + D MN +L+ V T ++ ++ ++ IRG+ I
Sbjct: 7 LKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
Query: 258 RY 263
+Y
Sbjct: 67 KY 68
>BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 33.9 bits (74), Expect = 0.39
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 81 LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNI 257
L + + +ELKNG +G + D MN +L+ V T ++ ++ ++ IRG+ I
Sbjct: 7 LKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
Query: 258 RY 263
+Y
Sbjct: 67 KY 68
>BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 33.9 bits (74), Expect = 0.39
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 81 LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNI 257
L + + +ELKNG +G + D MN +L+ V T ++ ++ ++ IRG+ I
Sbjct: 7 LKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
Query: 258 RY 263
+Y
Sbjct: 67 KY 68
>BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 33.9 bits (74), Expect = 0.39
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 81 LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNI 257
L + + +ELKNG +G + D MN +L+ V T ++ ++ ++ IRG+ I
Sbjct: 7 LKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
Query: 258 RY 263
+Y
Sbjct: 67 KY 68
>AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein.
Length = 139
Score = 33.9 bits (74), Expect = 0.39
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 81 LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNI 257
L + + +ELKNG +G + D MN +L+ V T ++ ++ ++ IRG+ I
Sbjct: 7 LKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
Query: 258 RY 263
+Y
Sbjct: 67 KY 68
>AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen protein.
Length = 139
Score = 33.9 bits (74), Expect = 0.39
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 81 LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNI 257
L + + +ELKNG +G + D MN +L+ V T ++ ++ ++ IRG+ I
Sbjct: 7 LKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
Query: 258 RY 263
+Y
Sbjct: 67 KY 68
>AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated
Sm-like protein LSm4 protein.
Length = 139
Score = 33.9 bits (74), Expect = 0.39
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 81 LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNI 257
L + + +ELKNG +G + D MN +L+ V T ++ ++ ++ IRG+ I
Sbjct: 7 LKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
Query: 258 RY 263
+Y
Sbjct: 67 KY 68
>AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein
protein.
Length = 139
Score = 33.9 bits (74), Expect = 0.39
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 81 LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNI 257
L + + +ELKNG +G + D MN +L+ V T ++ ++ ++ IRG+ I
Sbjct: 7 LKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
Query: 258 RY 263
+Y
Sbjct: 67 KY 68
>AK023807-1|BAB14687.1| 1424|Homo sapiens protein ( Homo sapiens
cDNA FLJ13745 fis, clone PLACE3000244, highly similar to
PROTEIN TSG24 (MEIOTIC CHECK POINT REGULATOR). ).
Length = 1424
Score = 31.1 bits (67), Expect = 2.8
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 96 HETVTIELKNGSVVHGTITGVDVA--MNTHLKAVKVTLKNREELQL 227
H VT+EL NGSVV TI + + + T L+A+K L +Q+
Sbjct: 72 HNRVTLELSNGSVVRITIPEIATSELVQTCLQAIKFILPKEIAVQM 117
>BC104904-1|AAI04905.1| 1944|Homo sapiens anaphase promoting complex
subunit 1 protein.
Length = 1944
Score = 29.9 bits (64), Expect = 6.4
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 96 HETVTIELKNGSVVHGTITGVDVA--MNTHLKAVKVTLKNREELQL 227
H VT+EL NGS+V TI + + + T L+A+K L +Q+
Sbjct: 592 HNRVTLELSNGSMVRITIPEIATSELVQTCLQAIKFILPKEIAVQM 637
>BC104902-1|AAI04903.1| 1944|Homo sapiens anaphase promoting complex
subunit 1 protein.
Length = 1944
Score = 29.9 bits (64), Expect = 6.4
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 96 HETVTIELKNGSVVHGTITGVDVA--MNTHLKAVKVTLKNREELQL 227
H VT+EL NGS+V TI + + + T L+A+K L +Q+
Sbjct: 592 HNRVTLELSNGSMVRITIPEIATSELVQTCLQAIKFILPKEIAVQM 637
>AJ278357-1|CAC19484.1| 1944|Homo sapiens Tsg24 protein protein.
Length = 1944
Score = 29.9 bits (64), Expect = 6.4
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +3
Query: 96 HETVTIELKNGSVVHGTITGVDVA--MNTHLKAVKVTLKNREELQL 227
H VT+EL NGS+V TI + + + T L+A+K L +Q+
Sbjct: 592 HNRVTLELSNGSMVRITIPEIATSELVQTCLQAIKFILPKEIAVQM 637
>BT006656-1|AAP35302.1| 343|Homo sapiens carbonic anhydrase XII
protein.
Length = 343
Score = 29.5 bits (63), Expect = 8.5
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = -1
Query: 363 DYRRLEGS---PPAYPFLL--VYRRLIMFLKVNCPVANSILYCSHVYSKSPIVILHDFSK 199
+Y R GS PP P +L V+R + + + LYC+H+ SP ++++F +
Sbjct: 217 EYYRYRGSLTTPPCNPTVLWTVFRNPVQISQEQLLALETALYCTHMDDPSPREMINNFRQ 276
Query: 198 L 196
+
Sbjct: 277 V 277
>BC023981-1|AAH23981.1| 354|Homo sapiens carbonic anhydrase XII
protein.
Length = 354
Score = 29.5 bits (63), Expect = 8.5
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = -1
Query: 363 DYRRLEGS---PPAYPFLL--VYRRLIMFLKVNCPVANSILYCSHVYSKSPIVILHDFSK 199
+Y R GS PP P +L V+R + + + LYC+H+ SP ++++F +
Sbjct: 217 EYYRYRGSLTTPPCNPTVLWTVFRNPVQISQEQLLALETALYCTHMDDPSPREMINNFRQ 276
Query: 198 L 196
+
Sbjct: 277 V 277
>BC011691-1|AAH11691.1| 343|Homo sapiens carbonic anhydrase XII
protein.
Length = 343
Score = 29.5 bits (63), Expect = 8.5
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = -1
Query: 363 DYRRLEGS---PPAYPFLL--VYRRLIMFLKVNCPVANSILYCSHVYSKSPIVILHDFSK 199
+Y R GS PP P +L V+R + + + LYC+H+ SP ++++F +
Sbjct: 217 EYYRYRGSLTTPPCNPTVLWTVFRNPVQISQEQLLALETALYCTHMDDPSPREMINNFRQ 276
Query: 198 L 196
+
Sbjct: 277 V 277
>BC000278-1|AAH00278.1| 343|Homo sapiens carbonic anhydrase XII
protein.
Length = 343
Score = 29.5 bits (63), Expect = 8.5
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = -1
Query: 363 DYRRLEGS---PPAYPFLL--VYRRLIMFLKVNCPVANSILYCSHVYSKSPIVILHDFSK 199
+Y R GS PP P +L V+R + + + LYC+H+ SP ++++F +
Sbjct: 217 EYYRYRGSLTTPPCNPTVLWTVFRNPVQISQEQLLALETALYCTHMDDPSPREMINNFRQ 276
Query: 198 L 196
+
Sbjct: 277 V 277
>AF051882-1|AAC39789.1| 354|Homo sapiens carbonic anhydrase XII
precursor protein.
Length = 354
Score = 29.5 bits (63), Expect = 8.5
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = -1
Query: 363 DYRRLEGS---PPAYPFLL--VYRRLIMFLKVNCPVANSILYCSHVYSKSPIVILHDFSK 199
+Y R GS PP P +L V+R + + + LYC+H+ SP ++++F +
Sbjct: 217 EYYRYRGSLTTPPCNPTVLWTVFRNPVQISQEQLLALETALYCTHMDDPSPREMINNFRQ 276
Query: 198 L 196
+
Sbjct: 277 V 277
>AF037335-1|AAC63952.1| 354|Homo sapiens carbonic anhydrase
precursor protein.
Length = 354
Score = 29.5 bits (63), Expect = 8.5
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Frame = -1
Query: 363 DYRRLEGS---PPAYPFLL--VYRRLIMFLKVNCPVANSILYCSHVYSKSPIVILHDFSK 199
+Y R GS PP P +L V+R + + + LYC+H+ SP ++++F +
Sbjct: 217 EYYRYRGSLTTPPCNPTVLWTVFRNPVQISQEQLLALETALYCTHMDDPSPREMINNFRQ 276
Query: 198 L 196
+
Sbjct: 277 V 277
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,645,215
Number of Sequences: 237096
Number of extensions: 1078207
Number of successful extensions: 2183
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 2133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2183
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5646880600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -