Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_G08
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    86   4e-18
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    26   3.1  
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces...    26   3.1  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    25   5.4  
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha...    25   7.1  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    25   9.4  
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    25   9.4  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 85.8 bits (203), Expect = 4e-18
 Identities = 58/159 (36%), Positives = 76/159 (47%), Gaps = 1/159 (0%)
 Frame = +3

Query: 3   TRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGT 182
           T+ R +L PGTVCILLAGR  GKR              TGP+  N  P+RR+  RYVI T
Sbjct: 46  TKLRASLAPGTVCILLAGRFRGKR-VVVLSQLEDTLVVTGPYKVNGVPIRRVNHRYVIAT 104

Query: 183 ST-KVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKEKYVPSEQRKADQKL 359
           S  K+D+    +      AYF              + E  FA    K     +R ADQK 
Sbjct: 105 SAPKIDVSGVSV-EKFTKAYF----AKQKRSGPVKKDEAFFAENAPKNALPAERIADQKA 159

Query: 360 VDEAVIKAIRLRPDKKTLRGHLRASFGLRSSQFPHRLRF 476
           VD  ++ AI+  P+ K    +L ASF L +   PH ++F
Sbjct: 160 VDAKLLPAIKAIPNMKE---YLAASFALSNGDRPHLMKF 195


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 79  CSLECCRVVCYSSLDLL 129
           CSLE   +VCYSSL +L
Sbjct: 764 CSLEVGPIVCYSSLKVL 780


>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 479 LEAQTVRELTRSEPERGPEVTAECLLVGPESDRLY 375
           LE + + EL R  PER P+   + +++    DR+Y
Sbjct: 139 LETKRLFELARYLPERYPKADKKDIIIKNPGDRVY 173


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 404 EDTPRSPQGLVRAPIESVPAPSALLDIRPVYKQKTI 511
           E+ P SPQ  +   IE +P    +L + P Y ++ +
Sbjct: 492 ENAP-SPQRYMHTAIECIPVSKRILSLAPAYFREAL 526


>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -3

Query: 133 KAKGPVKSSRPLGNTPTSTTR 71
           KAK P+KSS+   N P S  R
Sbjct: 3   KAKSPIKSSKKSVNQPKSVLR 23


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 89  SVAEWSATLHWTFCFQRVSPAQDSAAL 169
           S+ ++SA  H   CF   SP Q++ A+
Sbjct: 266 SLIKYSAAAHTRICFAVNSPCQEALAI 292


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 103 PLGNTPTSTTRLPACLPANR 44
           P  N  T  TRLP  +P+NR
Sbjct: 330 PRFNLATGATRLPFAIPSNR 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,971,391
Number of Sequences: 5004
Number of extensions: 34091
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)