Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_G08
(534 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 104 5e-23
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 99 2e-21
03_05_0412 + 23993452-23994068,23996249-23996350,23996799-239969... 30 1.3
02_01_0640 + 4796079-4797032,4797269-4797934 29 1.8
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 27 7.2
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251 27 7.2
06_02_0347 - 14926801-14926821,14927615-14928529,14928530-149286... 27 9.5
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 104 bits (249), Expect = 5e-23
Identities = 68/157 (43%), Positives = 83/157 (52%), Gaps = 2/157 (1%)
Frame = +3
Query: 12 RPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGTSTK 191
R ++TPGTV ILLAGR GKR TGPF N P+RR+ Q YVI TSTK
Sbjct: 95 RSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLVTGPFKINGVPIRRVNQPYVIATSTK 154
Query: 192 VDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKE--KYVPSEQRKADQKLVD 365
VD+ + DD YF +GE +F T+KE K +P E +K DQK+VD
Sbjct: 155 VDISGVNV-EKFDDKYF---SRDKKQKAKKTEGE-LFETEKEATKNLP-EFKKEDQKVVD 208
Query: 366 EAVIKAIRLRPDKKTLRGHLRASFGLRSSQFPHRLRF 476
+IKAI PD KT +L A F LR PH + F
Sbjct: 209 AELIKAIEAVPDLKT---YLGARFSLRDGDKPHEMVF 242
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 99.1 bits (236), Expect = 2e-21
Identities = 61/141 (43%), Positives = 77/141 (54%), Gaps = 2/141 (1%)
Frame = +3
Query: 3 TRTRPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXFTGPFAFNACPLRRIPQRYVIGT 182
T+ R +TPGTV ILLAGR+ GKR TGPF N P+RR+ Q YVI T
Sbjct: 69 TKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLITGPFKINGVPIRRVNQAYVIAT 128
Query: 183 STKVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKE--KYVPSEQRKADQK 356
STKVD+ K+ DD YF +GE +F T+KE K +P + +K DQK
Sbjct: 129 STKVDISGVKVD-KFDDKYF---ARDKKAKAKKTEGE-LFETEKEATKNLP-DFKKDDQK 182
Query: 357 LVDEAVIKAIRLRPDKKTLRG 419
VD +IKAI + PD K+ G
Sbjct: 183 AVDAELIKAIEVVPDLKSYLG 203
>03_05_0412 +
23993452-23994068,23996249-23996350,23996799-23996994,
23997075-23997259,23997394-23997498,23997625-23997722,
23997832-23998067,23998314-23998382,23999768-23999833,
24000513-24000611,24000688-24000750
Length = 611
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 166 RCGILRRGHALKAKGPVKSSRPLGNTPTSTT 74
RCG+ ++GH A GP + P ++ +TT
Sbjct: 23 RCGLPKKGHVCAAGGPAPTPSPSSSSGAATT 53
>02_01_0640 + 4796079-4797032,4797269-4797934
Length = 539
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 534 CSLGVLIQIVFCLYTGLISRSADGAGTDSIGARTRP 427
C + V++ +VF + ++RS DG G S G R P
Sbjct: 7 CVVAVVVVVVFAMLWVKLARSGDGGGGGSGGVRLPP 42
>06_03_0715 -
23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +2
Query: 350 PEAGRRGRDKGDQTPARQEDTPRSPQGLVRAPIESVPAPSALLDI 484
PE D D + RSP R+P S P+AL+D+
Sbjct: 15 PELADSDADDSDADASPSPSPSRSPSPSARSPSGSPSRPAALMDV 59
>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
Length = 1821
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -3
Query: 121 PVKSSRPLGNTPTSTTRLPACLPANRMHTVPGVRLG 14
P+KS+ P GN TTRL + A R+ TV + LG
Sbjct: 440 PLKSNHPKGNMILVTTRLLSL--AQRIGTVKPIELG 473
>06_02_0347 -
14926801-14926821,14927615-14928529,14928530-14928634,
14928698-14929003
Length = 448
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 362 RRGRDKGDQTPARQEDTPRSPQGLVRAPIESVPAPSALLDIR 487
R + +GD P Q+ +P+ R S+P S LD++
Sbjct: 258 RHSQQQGDVMPQFQQQVAATPKSSSRGANRSLPTSSKQLDVK 299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,999,185
Number of Sequences: 37544
Number of extensions: 268009
Number of successful extensions: 857
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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