Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_G08
         (534 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...   122   2e-28
Z75527-1|CAA99774.1|  441|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AF099003-3|ABA00149.1|  759|Caenorhabditis elegans Hypothetical ...    27   6.4  
AL032636-4|CAA21606.1|  123|Caenorhabditis elegans Hypothetical ...    27   8.5  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score =  122 bits (293), Expect = 2e-28
 Identities = 66/156 (42%), Positives = 87/156 (55%), Gaps = 1/156 (0%)
 Frame = +3

Query: 12  RPNLTPGTVCILLAGRHAGKRXXXXXXXXXXXXXF-TGPFAFNACPLRRIPQRYVIGTST 188
           R  LTPGTV I+LAGRH GKR               TGP   N  PLRRI Q +VI TS 
Sbjct: 68  RKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATSL 127

Query: 189 KVDLGDFKLPAHLDDAYFXXXXXXXXXXXXXXQGEDIFATKKEKYVPSEQRKADQKLVDE 368
           KV++   K+P H++D YF               G++IFA+ K +Y  SEQRK D K VD 
Sbjct: 128 KVNVSGVKIPEHINDEYFKRKSTAQKT------GKNIFASGKTEYTVSEQRKKDIKTVDA 181

Query: 369 AVIKAIRLRPDKKTLRGHLRASFGLRSSQFPHRLRF 476
            ++ AI+  P+ K L G+L   F L  +Q+PH+++F
Sbjct: 182 PILAAIKKHPEHKFLFGYLGTRFSLGKNQYPHKMQF 217


>Z75527-1|CAA99774.1|  441|Caenorhabditis elegans Hypothetical
           protein C15C8.1 protein.
          Length = 441

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -1

Query: 534 CSLGVLIQIVFCLYTGLISRSADGAGTD 451
           C++G++ +++ CL  GL+ +    AGT+
Sbjct: 195 CTVGIIAELLVCLCVGLMCKPKPAAGTN 222


>AF099003-3|ABA00149.1|  759|Caenorhabditis elegans Hypothetical
           protein Y59C2A.3 protein.
          Length = 759

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
 Frame = +3

Query: 291 EDIFATKKEKYVPSEQRKADQK-LVD-EAVIKAIRLRPDKKT 410
           E+ FA  + KY   +QRK +++ L+D E+++  +  +PD  T
Sbjct: 124 EEKFAYNRRKYESRKQRKTEERPLIDIESLMPMLESKPDVAT 165


>AL032636-4|CAA21606.1|  123|Caenorhabditis elegans Hypothetical
           protein Y40B1B.7 protein.
          Length = 123

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 309 KKEKYVPSEQRKADQKLVDEAVIKAIRLRPDKKTLRGHLRA 431
           KKE+ V  E+R+ + +   E V K  ++   KKT +  LR+
Sbjct: 72  KKERKVEQEKRRLENERKAEIVQKITKIHKLKKTKKRQLRS 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,258,606
Number of Sequences: 27780
Number of extensions: 208189
Number of successful extensions: 685
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)