Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_G05
(501 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical pr... 104 4e-23
U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like... 34 0.067
AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3 ... 34 0.067
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p... 31 0.62
Z72512-6|CAD44143.2| 657|Caenorhabditis elegans Hypothetical pr... 30 0.82
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati... 30 0.82
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr... 30 0.82
U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical pr... 29 1.9
U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical pr... 28 3.3
AL110500-19|CAB60433.2| 468|Caenorhabditis elegans Hypothetical... 28 4.4
>Z81461-2|CAB03835.1| 135|Caenorhabditis elegans Hypothetical
protein C04F12.4 protein.
Length = 135
Score = 104 bits (249), Expect = 4e-23
Identities = 54/131 (41%), Positives = 78/131 (59%)
Frame = +1
Query: 37 MPFARYVEPGRVALVSDGPLKGKLVGVVDIIDQTRALIDGPGSGVSRQQIRLNQLHLTKF 216
M F R V+ GRV ++ G +GKL +V++ID R IDGP S V+R L L LTKF
Sbjct: 1 MVFNRVVQIGRVVFIASGKDQGKLAAIVNVIDGNRVQIDGPSSDVTRTVRNLKDLQLTKF 60
Query: 217 RLKYPFTAPTRVVRKAWTDAQLNETWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVKRN 396
LK T+ V+ A+ A++ E + K+QWA+K+A + RA++TD++R+KL A+ RN
Sbjct: 61 VLKLRVGQRTKGVKAAFDAAKVTENFQKTQWAKKIAQRAIRAKLTDFERYKLMKAKQMRN 120
Query: 397 RARTAVFKSLK 429
R LK
Sbjct: 121 RIVRVELAKLK 131
>U41549-2|AAA83282.1| 208|Caenorhabditis elegans Histone h1 like
protein 3 protein.
Length = 208
Score = 33.9 bits (74), Expect = 0.067
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +1
Query: 274 AQLNETWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVKRNRARTAVFKSLKVKAARAGV 453
A E AK AQK A EK+A+ T + K T+ +VK+ ++ + K K A++
Sbjct: 127 AATGEKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVAKSP- 185
Query: 454 FGKSKIPKSA 483
K PK A
Sbjct: 186 -AKKSAPKKA 194
>AF012253-1|AAB66471.1| 208|Caenorhabditis elegans histone H1.3
protein.
Length = 208
Score = 33.9 bits (74), Expect = 0.067
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +1
Query: 274 AQLNETWAKSQWAQKLANKEKRAQMTDYDRFKLTSARVKRNRARTAVFKSLKVKAARAGV 453
A E AK AQK A EK+A+ T + K T+ +VK+ ++ + K K A++
Sbjct: 127 AATGEKKAKKPVAQKAATGEKKAKKTTATKTKKTADKVKKVKSPKKIAKPTAKKVAKSP- 185
Query: 454 FGKSKIPKSA 483
K PK A
Sbjct: 186 -AKKSAPKKA 194
>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
protein Y49E10.19 protein.
Length = 1159
Score = 30.7 bits (66), Expect = 0.62
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +1
Query: 298 KSQWAQKLANKEKRAQMTDYDRFKLTSARVKRNRARTAVFKSLKVKAAR 444
++QWA ++ RA +T+YDR K R+ T L V AR
Sbjct: 807 EAQWAMLRHVEKHRALLTEYDRLKRDGPRIIDGPRGTITVSQLSVNMAR 855
>Z72512-6|CAD44143.2| 657|Caenorhabditis elegans Hypothetical
protein R07B5.9 protein.
Length = 657
Score = 30.3 bits (65), Expect = 0.82
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = -2
Query: 158 GPSISARV*---SMISTTPTNFPFRGPSETRATRPGS 57
GPS S+ V SMI+TTP PF P+ + PGS
Sbjct: 374 GPSTSSHVTPQMSMINTTPQQPPFSHPNSQQQATPGS 410
>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
protein protein.
Length = 1439
Score = 30.3 bits (65), Expect = 0.82
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +1
Query: 130 DQTRALI-DGPGSGVSRQQIRLNQLHLTKFRLKYPFTAPTRVVRKAWTDAQLNETWAKSQ 306
DQ A++ +G G + R ++ +K +LK TAP V + WT + T A S
Sbjct: 1033 DQAAAMMNEGKGQKIKNMLRRNSRRDKSKSKLKIESTAPAAVNPRGWTQPTPSNTSAASV 1092
Query: 307 WAQKLANKEKR 339
+ N ++R
Sbjct: 1093 ESAFCGNYQER 1103
>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical protein
C04D8.1 protein.
Length = 1317
Score = 30.3 bits (65), Expect = 0.82
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +1
Query: 130 DQTRALI-DGPGSGVSRQQIRLNQLHLTKFRLKYPFTAPTRVVRKAWTDAQLNETWAKSQ 306
DQ A++ +G G + R ++ +K +LK TAP V + WT + T A S
Sbjct: 911 DQAAAMMNEGKGQKIKNMLRRNSRRDKSKSKLKIESTAPAAVNPRGWTQPTPSNTSAASV 970
Query: 307 WAQKLANKEKR 339
+ N ++R
Sbjct: 971 ESAFCGNYQER 981
>U23452-3|AAU87818.1| 1982|Caenorhabditis elegans Hypothetical protein
R07G3.3a protein.
Length = 1982
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2
Query: 161 PGPSISARV*SMISTTPTNFPFRGPSETRATRPGST*RAKGMTSSQEP 18
PGPS +++ S I TPT P + A +P + G+ +SQ+P
Sbjct: 1434 PGPSSASKSVSSIRQTPTK--VLDPLSSAAKQPNEPDQTTGLKTSQQP 1479
>U23452-2|AAU87819.1| 1987|Caenorhabditis elegans Hypothetical protein
R07G3.3b protein.
Length = 1987
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2
Query: 161 PGPSISARV*SMISTTPTNFPFRGPSETRATRPGST*RAKGMTSSQEP 18
PGPS +++ S I TPT P + A +P + G+ +SQ+P
Sbjct: 1434 PGPSSASKSVSSIRQTPTK--VLDPLSSAAKQPNEPDQTTGLKTSQQP 1479
>Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical
protein ZK455.2 protein.
Length = 1118
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +3
Query: 207 NKIP-PKIPFYSTHTCCQKSVDRR 275
N+ P P P+YST T C K+V RR
Sbjct: 53 NRSPSPHEPYYSTRTRCSKNVRRR 76
>AL110500-19|CAB60433.2| 468|Caenorhabditis elegans Hypothetical
protein Y87G2A.13 protein.
Length = 468
Score = 27.9 bits (59), Expect = 4.4
Identities = 22/87 (25%), Positives = 41/87 (47%)
Frame = -2
Query: 350 VICALFSLFANFCAHWLLAHVSFS*ASVHAFLTTRVGAVKGYFRRNFVKWSWLRRICCRE 171
+I + S F +H L AH++ + V A + G VK Y + + + + R +CC
Sbjct: 318 IIGWVLSKFLTRVSH-LQAHLNLAYDKV-AEMRAEAGKVKNYTIQAMI-YRYYRYLCCAA 374
Query: 170 TPLPGPSISARV*SMISTTPTNFPFRG 90
GP++ A + +++ T N + G
Sbjct: 375 LQYFGPAVLALLFALLLKTTGNLSWIG 401
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,013,428
Number of Sequences: 27780
Number of extensions: 215750
Number of successful extensions: 620
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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