Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_G04
         (446 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087232-1|AAK09079.2|  574|Caenorhabditis elegans Hypothetical ...    29   2.0  
U28943-1|AAA68356.1|  635|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>AC087232-1|AAK09079.2|  574|Caenorhabditis elegans Hypothetical
           protein Y92H12BR.7 protein.
          Length = 574

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +1

Query: 223 KNYQLIITYKDIVKLVIKCLNS 288
           KNY+L +T  DI K+ IKC+++
Sbjct: 195 KNYELQVTAGDIYKIEIKCIST 216


>U28943-1|AAA68356.1|  635|Caenorhabditis elegans Hypothetical
           protein E04F6.4 protein.
          Length = 635

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 250 KDIVKLVIKCLNSKSALYGPVKNR 321
           K+  KL+  CL+S S L+ P +NR
Sbjct: 469 KEEEKLMFSCLHSLSVLHSPTENR 492


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,965,702
Number of Sequences: 27780
Number of extensions: 129998
Number of successful extensions: 215
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)